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Sample GSM188249 Query DataSets for GSM188249
Status Public on May 18, 2007
Title GFP+ CD4+ CD8- thymocytes from Foxp3(gfp/gfp) mice
Sample type RNA
Source name thymocytes
Organism Mus musculus
Characteristics Strain: C57BL/6 backcross 4-6 from 129/Sv Gender: Female Age: 6-8 weeks
Treatment protocol Cells were isolated by magnetic bead sorting followed by fluorescence activated cell sorting.
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy
Label biotin
Label protocol RNA was converted to biotinylated cRNA (2 rounds of amplification) using commercially available reagent kits (Affymetrix, Santa Clara, CA) and were hybridized to Affymetrix mouse 430 2.0 microarrays.
Hybridization protocol Standard hybridization to Affymetrix 430_2.0 arrays.
Scan protocol Standard scanning of Affymetrix 430_2.0 arrays.
Description Foxp3(gfp/gfp) homozygous female mice bear a GFP-Foxp3 fusion protein knockin allele, allowing for the visualization of regulatory T cells due to GFP-Foxp3 protein fluorescence.
Data processing GCMRA, Bioconductor
Submission date May 09, 2007
Last update date Aug 28, 2018
Contact name Alexander Rudensky
Organization name University of Washington
Department Immunology
Street address 1959 Pacific St
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
Platform ID GPL1261
Series (2)
GSE7770 Gene expression in thymic CD4 T cells: effects of Foxp3
GSE7773 Foxp3-dependent programme of regulatory T-cell differentiation
Reanalyzed by GSE119085

Data table header descriptions
VALUE Thymic TR cells

Data table
1415670_at 9.009140763
1415671_at 6.842232681
1415672_at 9.660678516
1415673_at 6.774834353
1415674_a_at 6.115562099
1415675_at 6.024065442
1415676_a_at 8.694075215
1415677_at 3.953959109
1415678_at 7.062476062
1415679_at 10.0184638
1415680_at 7.914845054
1415681_at 5.564322151
1415682_at 4.153478398
1415683_at 10.06606861
1415684_at 4.350004164
1415685_at 8.258065302
1415686_at 6.887337516
1415687_a_at 8.714370063
1415688_at 8.539478827
1415689_s_at 7.660052017

Total number of rows: 45101

Table truncated, full table size 1026 Kbytes.

Supplementary file Size Download File type/resource
GSM188249.CEL.gz 3.8 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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