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Sample GSM189666 Query DataSets for GSM189666
Status Public on May 23, 2007
Title Feeder dependent ES cell line V6.5 (duplicate)
Sample type RNA
 
Source name ES Cells
Organism Mus musculus
Characteristics Feeder Dependent ES Cell Line V6.5
Extracted molecule total RNA
Extraction protocol RNA was extracted using the RNA easy Mini kit from Qiagen
Label Cy3
Label protocol Labeled cRNA was prepared from 0.5 microgram of RNA using the Agilent one color labeling protocol
 
Hybridization protocol 1.65microgram of cRNA was fragmented and hybridized to Agilent whole mouse genome oligo microarray kit G4122F using manufacturers instructions.
Scan protocol Scanned by Agilent Software
Description N/A
Data processing Signals were calculated by the Agilent Feature Extraction software and automatically underwent Lowess normalization.
 
Submission date May 15, 2007
Last update date May 23, 2007
Contact name Kathrin Plath
Organization name UCLA
Department Biological Chemistry
Lab BSRB 390B
Street address 615 Charles E. Young Drive South
City Los Angeles
State/province CA
ZIP/Postal code 90095-1737
Country USA
 
Platform ID GPL4134
Series (1)
GSE7815 Histone H3K4 and H3K27 trimethylation analysis in ES cells, Mefs and induced pluriptent cells.

Data table header descriptions
ID_REF
VALUE Processed Cy3 Signal
gBGMeanSignal Cy3 Background Signal

Data table
ID_REF VALUE gBGMeanSignal
1 2.008384e+004 3.206872e+001
2 6.326440e+000 3.305234e+001
3 6.104412e+000 3.215370e+001
4 6.220480e+000 3.284000e+001
5 6.331879e+000 3.302652e+001
6 6.434223e+000 3.340936e+001
7 6.533052e+000 3.353462e+001
8 8.423526e+000 3.347843e+001
9 6.707068e+000 3.348456e+001
10 6.785074e+000 3.348833e+001
11 6.858769e+000 3.422309e+001
12 6.925239e+000 3.372106e+001
13 6.048707e+001 3.432283e+001
14 7.040302e+000 3.438685e+001
15 2.410313e+001 3.396881e+001
16 1.119159e+003 3.416601e+001
18 8.611313e+000 3.420077e+001
19 7.243483e+000 3.346741e+001
20 7.271083e+000 3.329282e+001
21 7.855773e+000 3.331191e+001

Total number of rows: 45018

Table truncated, full table size 1483 Kbytes.




Supplementary file Size Download File type/resource
GSM189666.txt.gz 9.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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