NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM189792 Query DataSets for GSM189792
Status Public on May 18, 2007
Title Hypoxic BL6 array 5
Sample type RNA
 
Source name Whole lung homogenate
Organism Mus musculus
Characteristics Whole lung homogenate from C57/BL6 mice exposed to 4 weeks hypobaric hypoxia (50 kPa)
Extracted molecule total RNA
Extraction protocol right lung was removed immediately after sacrifice, snap frozen, and later converted to RNA using Qiagen rnEasy columns.
Label Biotin
Label protocol following Affymetrix GeneChip Expression Analysis Manual
 
Hybridization protocol following Affymetrix GeneChip Expression Analysis Manual
Scan protocol following Affymetrix GeneChip Expression Analysis Manual
Description Whole lung homogenate from C57/BL6 mice exposed to 4 weeks hypobaric hypoxia (50 kPa)
Data processing Affymetrix chp and cel files
 
Submission date May 16, 2007
Last update date Aug 28, 2018
Contact name James West
E-mail(s) j.west@vanderbilt.edu
Organization name Vanderbilt University
Department Medicine
Lab Pulmonary
Street address 4200 E 9TH Ave, Box B133
City Nashville
State/province TN
ZIP/Postal code 37201
Country USA
 
Platform ID GPL1261
Series (1)
GSE7823 Murine Pulmonary Response to Chronic Hypoxia is Strain Specific
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE Expression level
ABS_CALL present or absent call
DETECTION P-VALUE p value for present or absent

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 306.402 P 0.000856509
AFFX-BioB-M_at 659.033 P 6.02111e-05
AFFX-BioB-3_at 419.641 P 0.000169227
AFFX-BioC-5_at 1255.55 P 4.42873e-05
AFFX-BioC-3_at 1196.09 P 4.42873e-05
AFFX-BioDn-5_at 2770.65 P 4.42873e-05
AFFX-BioDn-3_at 5346.47 P 4.42873e-05
AFFX-CreX-5_at 14082.9 P 4.42873e-05
AFFX-CreX-3_at 18969.6 P 4.42873e-05
AFFX-DapX-5_at 4.80072 A 0.51489
AFFX-DapX-M_at 10.4797 A 0.617401
AFFX-DapX-3_at 5.53198 A 0.834181
AFFX-LysX-5_at 7.16107 A 0.470238
AFFX-LysX-M_at 4.24885 A 0.834139
AFFX-LysX-3_at 16.4794 A 0.147939
AFFX-PheX-5_at 2.1628 A 0.699409
AFFX-PheX-M_at 3.09624 A 0.9273
AFFX-PheX-3_at 7.19999 A 0.645547
AFFX-ThrX-5_at 2.00777 A 0.960352
AFFX-ThrX-M_at 5.83289 A 0.672921

Total number of rows: 45101

Table truncated, full table size 1395 Kbytes.




Supplementary file Size Download File type/resource
GSM189792.CEL.gz 6.0 Mb (ftp)(http) CEL
GSM189792.CHP.gz 10.9 Mb (ftp)(http) CHP
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap