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Sample GSM189793 Query DataSets for GSM189793
Status Public on May 18, 2007
Title Hypoxic FVB/N array 2
Sample type RNA
 
Source name Whole lung homogenate
Organism Mus musculus
Characteristics Whole lung homogenate from FVB/N mice exposed to 4 weeks hypobaric hypoxia (50 kPa)
Extracted molecule total RNA
Extraction protocol right lung was removed immediately after sacrifice, snap frozen, and later converted to RNA using Qiagen rnEasy columns.
Label Biotin
Label protocol following Affymetrix GeneChip Expression Analysis Manual
 
Hybridization protocol following Affymetrix GeneChip Expression Analysis Manual
Scan protocol following Affymetrix GeneChip Expression Analysis Manual
Description Whole lung homogenate from FVB/N mice exposed to 4 weeks hypobaric hypoxia (50 kPa)
Data processing Affymetrix chp and cel files
 
Submission date May 16, 2007
Last update date Aug 28, 2018
Contact name James West
E-mail(s) j.west@vanderbilt.edu
Organization name Vanderbilt University
Department Medicine
Lab Pulmonary
Street address 4200 E 9TH Ave, Box B133
City Nashville
State/province TN
ZIP/Postal code 37201
Country USA
 
Platform ID GPL1261
Series (1)
GSE7823 Murine Pulmonary Response to Chronic Hypoxia is Strain Specific
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE Expression level
ABS_CALL present or absent call
DETECTION P-VALUE p value for present or absent

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 365.419 P 0.000753643
AFFX-BioB-M_at 679.637 P 5.16732e-05
AFFX-BioB-3_at 525.817 P 4.42873e-05
AFFX-BioC-5_at 1513.05 P 4.42873e-05
AFFX-BioC-3_at 1163.95 P 5.16732e-05
AFFX-BioDn-5_at 3267.64 P 4.42873e-05
AFFX-BioDn-3_at 6595.59 P 4.42873e-05
AFFX-CreX-5_at 19175.8 P 4.42873e-05
AFFX-CreX-3_at 20336.2 P 4.42873e-05
AFFX-DapX-5_at 1.94666 A 0.852061
AFFX-DapX-M_at 1.48349 A 0.979987
AFFX-DapX-3_at 4.66183 A 0.804734
AFFX-LysX-5_at 11.3222 A 0.470241
AFFX-LysX-M_at 14.4323 A 0.58862
AFFX-LysX-3_at 34.9043 A 0.0956476
AFFX-PheX-5_at 2.62341 A 0.897835
AFFX-PheX-M_at 1.43495 A 0.957038
AFFX-PheX-3_at 9.13132 A 0.470241
AFFX-ThrX-5_at 4.3425 A 0.631562
AFFX-ThrX-M_at 15.8223 A 0.262827

Total number of rows: 45101

Table truncated, full table size 1394 Kbytes.




Supplementary file Size Download File type/resource
GSM189793.CEL.gz 5.9 Mb (ftp)(http) CEL
GSM189793.CHP.gz 10.8 Mb (ftp)(http) CHP
Processed data provided as supplementary file

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