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Sample GSM189823 Query DataSets for GSM189823
Status Public on Jun 07, 2007
Title CET at 150 µg/kg BW for 24 h_3
Sample type RNA
 
Source name CL from female bonnet monkey 24 h post CET treatment
Organism Macaca radiata
Characteristics CL collected from female bonnet monkey 24 h post CET treatment
Biomaterial provider R. Medhamurthy
Treatment protocol A single s.c. injection of GnRH receptor antagonist, Cetrorelix (CET) was administered at a dose of 150 µg/kg BW to female monkeys on day 7 of luteal phase and CL collected at 24 h post treatment was cut into small quarters and snap frozen in liquid nitrogen.
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using Trizol reagent (Sigma Aldrich Co., St.Louis, MO) followed by clean up step using RNeasy mini purification kit (# 74104, Qiagen).
Label Biotin
Label protocol Standard Affymetrix protocols (Chip Expression Analysis Technical Manual rev.3, 2001)
 
Hybridization protocol Standard Affymetrix protocols (Chip Expression Analysis Technical Manual rev.3, 2001)
Scan protocol Standard Affymetrix protocols (Chip Expression Analysis Technical Manual rev.3, 2001) using scanner 3000 series
Description Probe level measurements produced by Affymetrix microarray suite 5.0. Analysis performed at level of raw signals (See Affymetrix Microarray suite 5.0 reference on web site for description).
Data processing MAS5.0, data was normalized with standard Affymetrix protocols (Chip Expression Analysis Technical Manual rev.3, 2001)
 
Submission date May 17, 2007
Last update date Jun 06, 2007
Contact name priyanka samji
E-mail(s) priyanka@mrdg.iisc.ernet.in
Phone 91-80-22932490
Fax 91-80-23600999
Organization name Indian Institute of Science
Department Molecular Reproduction Development and Genetics
Lab R. Medhamurthy's lab
Street address Malleswaram
City Bangalore
State/province Karnataka
ZIP/Postal code 560012
Country India
 
Platform ID GPL3535
Series (1)
GSE7827 Identification of luteinizing hormone regulated genes in the primate corpus luteum

Data table header descriptions
ID_REF
VALUE MAS 5.0-derived signal intensities
ABS_CALL DT; the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE DP; 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 889.906 P 0.0429619
AFFX-BioB-M_at 1287.35 P 0.0239288
AFFX-BioB-3_at 450.524 M 0.0584438
AFFX-BioC-5_at 2638.82 P 0.0032123
AFFX-BioC-3_at 1553.42 A 0.0894781
AFFX-BioDn-5_at 2072.22 P 0.00110197
AFFX-BioDn-3_at 13094.2 P 0.0032123
AFFX-CreX-5_at 20285.1 P 5.16732e-05
AFFX-CreX-3_at 24054.8 P 4.42873e-05
AFFX-DapX-5_at 271.885 M 0.050229
AFFX-DapX-M_at 67.2463 A 0.470241
AFFX-DapX-3_at 31.958 A 0.868639
AFFX-LysX-5_at 65.6849 A 0.659339
AFFX-LysX-M_at 241.665 A 0.455413
AFFX-LysX-3_at 137.535 A 0.147939
AFFX-PheX-5_at 40.6992 A 0.645547
AFFX-PheX-M_at 109.385 A 0.645547
AFFX-PheX-3_at 97.4012 A 0.760937
AFFX-ThrX-5_at 66.1335 A 0.868639
AFFX-ThrX-M_at 144.288 A 0.559354

Total number of rows: 52865

Table truncated, full table size 2091 Kbytes.




Supplementary file Size Download File type/resource
GSM189823.CEL.gz 6.9 Mb (ftp)(http) CEL
GSM189823.CHP.gz 289.6 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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