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Sample GSM189826 Query DataSets for GSM189826
Status Public on Jun 07, 2007
Title Vehicle control (5.25% glucose) for 24 h_6
Sample type RNA
 
Source name CL from female bonnet monkey 24 h post VEH (5.25% glucose)
Organism Macaca radiata
Characteristics CL collected from female bonnet monkey 24 h post VEH (5.25% glucose)
Biomaterial provider R. Medhamurthy
Treatment protocol A single s.c. injection of VEH (5.25% glucose) was administered to female monkeys on day 7 of luteal phase and CL collected at 24 h post VEH injection was cut into small quarters and snap frozen in liquid nitrogen.
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using Trizol reagent (Sigma Aldrich Co., St.Louis, MO) followed by clean up step using RNeasy mini purification kit (# 74104, Qiagen).
Label Biotin
Label protocol Standard Affymetrix protocols (Chip Expression Analysis Technical Manual rev.3, 2001)
 
Hybridization protocol Standard Affymetrix protocols (Chip Expression Analysis Technical Manual rev.3, 2001)
Scan protocol Standard Affymetrix protocols (Chip Expression Analysis Technical Manual rev.3, 2001) using scanner 3000 series
Description Probe level measurements produced by Affymetrix microarray suite 5.0. Analysis performed at level of raw signals (See Affymetrix Microarray suite 5.0 reference on web site for description).
Data processing MAS5.0, data was normalized with standard Affymetrix protocols (Chip Expression Analysis Technical Manual rev.3, 2001)
 
Submission date May 17, 2007
Last update date Jun 06, 2007
Contact name priyanka samji
E-mail(s) priyanka@mrdg.iisc.ernet.in
Phone 91-80-22932490
Fax 91-80-23600999
Organization name Indian Institute of Science
Department Molecular Reproduction Development and Genetics
Lab R. Medhamurthy's lab
Street address Malleswaram
City Bangalore
State/province Karnataka
ZIP/Postal code 560012
Country India
 
Platform ID GPL3535
Series (1)
GSE7827 Identification of luteinizing hormone regulated genes in the primate corpus luteum

Data table header descriptions
ID_REF
VALUE MAS 5.0-derived signal intensities
ABS_CALL DT; the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE DP; 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1846.84 P 0.00499819
AFFX-BioB-M_at 2691.92 P 0.000856509
AFFX-BioB-3_at 1189.41 P 0.000509415
AFFX-BioC-5_at 4391.46 P 0.00141043
AFFX-BioC-3_at 2398.49 P 0.000662269
AFFX-BioDn-5_at 4525.95 P 4.42873e-05
AFFX-BioDn-3_at 19210.1 P 0.000581214
AFFX-CreX-5_at 44174.2 P 5.16732e-05
AFFX-CreX-3_at 49001 P 4.42873e-05
AFFX-DapX-5_at 133.501 P 0.0336773
AFFX-DapX-M_at 167.101 A 0.368438
AFFX-DapX-3_at 52.4182 A 0.645547
AFFX-LysX-5_at 45.667 A 0.470241
AFFX-LysX-M_at 57.3151 A 0.672921
AFFX-LysX-3_at 93.0155 A 0.175328
AFFX-PheX-5_at 64.0531 A 0.617411
AFFX-PheX-M_at 14.8225 A 0.921998
AFFX-PheX-3_at 55.4731 A 0.804734
AFFX-ThrX-5_at 198.65 A 0.631562
AFFX-ThrX-M_at 148.629 A 0.41138

Total number of rows: 52865

Table truncated, full table size 2102 Kbytes.




Supplementary file Size Download File type/resource
GSM189826.CEL.gz 5.7 Mb (ftp)(http) CEL
GSM189826.CHP.gz 291.2 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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