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Sample GSM190789 Query DataSets for GSM190789
Status Public on Jul 01, 2007
Title PP M CELL1
Sample type RNA
 
Source name PP M CELL
Organism Mus musculus
Characteristics Mouse Peyer's patch M cell
Extracted molecule total RNA
Extraction protocol RNA was isolated with a High Pure RNA Tissue Kit (Roche, Penzberg, Germany) according to the manufacturer’s instructions.
Label Biotin
Label protocol Biotinylated cRNA was prepared using a two-cycle target labeling assay in accordance with the protocol of the manufacture (Affymetrix, Santa Clara, CA, USA).
 
Hybridization protocol The cRNA was hybridized with DNA probes on a GeneChip Mouse Genome 430 2.0 Array (Affymetrix), washed, and fluorescence-labeled in accordance with the standard amplification protocol for eukaryotic targets developed by Affymetrix.
Scan protocol The arrays were scanned with a GeneChip Scanner 3000 7G (Affymetrix). The fluorescence intensity of each probe was taken to represent the raw expression level and was quantified using GeneChip Operating software (Affymetrix).
Description Epithelial cells in duodenal Peyer's patches (PP) of naive BALB/c mice were stained with NKM16-2-4 monoclonal antibody (mAb)-FITC, lectin UEA-1-PE, and anti-CD45 mAb-APC-Cy7. PP M cells (NKM16-2-4+, UEA-1+, and CD45- cells) were isolated by FACS.
Data processing The fluorescence intensity of each probe was taken to represent the raw expression level and was quantified using GeneChip Operating Software (Affymetrix).
 
Submission date May 21, 2007
Last update date Aug 28, 2018
Contact name Kazutaka Terahara
E-mail(s) tera@nih.go.jp
Organization name The University of Tokyo
Department Institute of Medical Science
Street address 4-6-1 Shirokanedai
City Minato-ku
ZIP/Postal code 108-8639
Country Japan
 
Platform ID GPL1261
Series (1)
GSE7838 Comprehensive Gene ExpressionProfiling of Peyer’s Patch M Cells, Villous M-like Cells, and Intestinal Epithelial Cells
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE RAW VALUE
ABS_CALL ABSENT PRESENT MARGINAL
DETECTION P-VALUE P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 209.8 P 0.00011
AFFX-BioB-M_at 344.1 P 0.00006
AFFX-BioB-3_at 239.9 P 0.000044
AFFX-BioC-5_at 624.1 P 0.000044
AFFX-BioC-3_at 567.6 P 0.000044
AFFX-BioDn-5_at 1161.7 P 0.000044
AFFX-BioDn-3_at 2061.2 P 0.000044
AFFX-CreX-5_at 6509.9 P 0.000044
AFFX-CreX-3_at 6629.6 P 0.000044
AFFX-DapX-5_at 102.5 P 0.00007
AFFX-DapX-M_at 942.2 P 0.000052
AFFX-DapX-3_at 1876.8 P 0.000044
AFFX-LysX-5_at 16.4 P 0.020022
AFFX-LysX-M_at 129 P 0.000044
AFFX-LysX-3_at 285.6 P 0.000044
AFFX-PheX-5_at 49.9 P 0.000195
AFFX-PheX-M_at 166 P 0.000127
AFFX-PheX-3_at 334.2 P 0.000127
AFFX-ThrX-5_at 25.7 P 0.001248
AFFX-ThrX-M_at 137.7 P 0.000044

Total number of rows: 45101

Table truncated, full table size 1185 Kbytes.




Supplementary file Size Download File type/resource
GSM190789.CEL.gz 3.4 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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