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Status
Public on Mar 28, 2004
Title
Mouse Hypothalamus Male 1 (technical replicate)
Sample type
RNA
Source name
Mouse Hypothalamus
Organism
Mus musculus
Extracted molecule
total RNA
Description
Triple selected polyA RNA for liver, kidney, ovary, testis, was obtained from Ambion (Austin, TX). Total RNA was obtained form Ambion for hypothalamus samples. All RNA samples had an agilent ratio greater than 1 indicating that degradation had not occurred. All RNA samples were prepared from a pool of 10 different animals. The total RNA samples were labeled for hybridization onto the microarray according to affymetrix protocols listed at:http://keck.med.yale.edu/affymetrix/protocols Keywords = Sex Specific Transcription, Mouse, Affymetrix, Healthy Mammalian Tissue
Submission date
Mar 26, 2004
Last update date
May 27, 2005
Contact name
Joel Rozowsky
E-mail(s)
rozowsky@csb.yale.edu
Phone
203-432-5405
Organization name
Yale University
Department
Molecular Biophysics & Biochemistry
Lab
Gerstein Lab
Street address
266 Whitney Ave, Bass 437
City
New Haven
State/province
CT
ZIP/Postal code
06520
Country
USA
Platform ID
GPL339
Series (1)
GSE1148
Sex Specific Transciption in Mouse Tissues
Data table header descriptions
ID_REF
VALUE
MAS 5.0 Intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
215.6
P
0.005565
AFFX-BioB-M_at
380.3
P
0.000662
AFFX-BioB-3_at
156.9
P
0.001248
AFFX-BioC-5_at
606.2
P
0.000169
AFFX-BioC-3_at
429.7
P
0.000070
AFFX-BioDn-5_at
410.2
P
0.000070
AFFX-BioDn-3_at
2921.5
P
0.000225
AFFX-CreX-5_at
5154.2
P
0.000044
AFFX-CreX-3_at
7746.1
P
0.000044
AFFX-DapX-5_at
12.2
A
0.368438
AFFX-DapX-M_at
36.7
A
0.262827
AFFX-DapX-3_at
30.5
A
0.631562
AFFX-LysX-5_at
8.4
A
0.485110
AFFX-LysX-M_at
14.9
A
0.603080
AFFX-LysX-3_at
25.8
A
0.139482
AFFX-PheX-5_at
5.6
A
0.876428
AFFX-PheX-M_at
7.2
A
0.760937
AFFX-PheX-3_at
49.2
A
0.396920
AFFX-ThrX-5_at
8.1
A
0.760937
AFFX-ThrX-M_at
17.7
A
0.485110
Total number of rows: 22690 Table truncated, full table size 630 Kbytes .Supplementary data files not provided