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Sample GSM19216 Query DataSets for GSM19216
Status Public on Mar 28, 2004
Title Mouse Hypothalamus Male 1 (technical replicate)
Sample type RNA
 
Source name Mouse Hypothalamus
Organism Mus musculus
Extracted molecule total RNA
 
Description Triple selected polyA RNA for liver, kidney, ovary,
testis, was obtained from Ambion (Austin, TX). Total
RNA was obtained form Ambion for hypothalamus samples.
All RNA samples had an agilent ratio greater
than 1 indicating that degradation had not occurred.
All RNA samples were prepared from a pool of 10
different animals. The total RNA samples were
labeled for hybridization onto the microarray according
to affymetrix protocols listed at:
http://keck.med.yale.edu/affymetrix/protocols
Keywords = Sex Specific Transcription, Mouse, Affymetrix, Healthy Mammalian Tissue
 
Submission date Mar 26, 2004
Last update date May 27, 2005
Contact name Joel Rozowsky
E-mail(s) rozowsky@csb.yale.edu
Phone 203-432-5405
Organization name Yale University
Department Molecular Biophysics & Biochemistry
Lab Gerstein Lab
Street address 266 Whitney Ave, Bass 437
City New Haven
State/province CT
ZIP/Postal code 06520
Country USA
 
Platform ID GPL339
Series (1)
GSE1148 Sex Specific Transciption in Mouse Tissues

Data table header descriptions
ID_REF
VALUE MAS 5.0 Intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 215.6 P 0.005565
AFFX-BioB-M_at 380.3 P 0.000662
AFFX-BioB-3_at 156.9 P 0.001248
AFFX-BioC-5_at 606.2 P 0.000169
AFFX-BioC-3_at 429.7 P 0.000070
AFFX-BioDn-5_at 410.2 P 0.000070
AFFX-BioDn-3_at 2921.5 P 0.000225
AFFX-CreX-5_at 5154.2 P 0.000044
AFFX-CreX-3_at 7746.1 P 0.000044
AFFX-DapX-5_at 12.2 A 0.368438
AFFX-DapX-M_at 36.7 A 0.262827
AFFX-DapX-3_at 30.5 A 0.631562
AFFX-LysX-5_at 8.4 A 0.485110
AFFX-LysX-M_at 14.9 A 0.603080
AFFX-LysX-3_at 25.8 A 0.139482
AFFX-PheX-5_at 5.6 A 0.876428
AFFX-PheX-M_at 7.2 A 0.760937
AFFX-PheX-3_at 49.2 A 0.396920
AFFX-ThrX-5_at 8.1 A 0.760937
AFFX-ThrX-M_at 17.7 A 0.485110

Total number of rows: 22690

Table truncated, full table size 630 Kbytes.




Supplementary data files not provided

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