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Sample GSM19228 Query DataSets for GSM19228
Status Public on Mar 28, 2004
Title Mouse Liver Male 1 (technical replicate)
Sample type RNA
 
Source name Mouse Liver
Organism Mus musculus
Extracted molecule total RNA
 
Description Triple selected polyA RNA for liver, kidney, ovary,
testis, was obtained from Ambion (Austin, TX). Total
RNA was obtained form Ambion for hypothalamus samples.
All RNA samples had an agilent ratio greater
than 1 indicating that degradation had not occurred.
All RNA samples were prepared from a pool of 10
different animals. The total RNA samples were
labeled for hybridization onto the microarray according
to affymetrix protocols listed at:
http://keck.med.yale.edu/affymetrix/protocols
Keywords = Sex Specific Transcription, Mouse, Affymetrix, Healthy Mammalian Tissue
 
Submission date Mar 26, 2004
Last update date May 27, 2005
Contact name Joel Rozowsky
E-mail(s) rozowsky@csb.yale.edu
Phone 203-432-5405
Organization name Yale University
Department Molecular Biophysics & Biochemistry
Lab Gerstein Lab
Street address 266 Whitney Ave, Bass 437
City New Haven
State/province CT
ZIP/Postal code 06520
Country USA
 
Platform ID GPL339
Series (1)
GSE1148 Sex Specific Transciption in Mouse Tissues

Data table header descriptions
ID_REF
VALUE MAS 5.0 Intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 185.0 P 0.030976
AFFX-BioB-M_at 290.8 P 0.001593
AFFX-BioB-3_at 164.7 P 0.011384
AFFX-BioC-5_at 511.0 P 0.000195
AFFX-BioC-3_at 337.7 P 0.000070
AFFX-BioDn-5_at 430.1 P 0.000127
AFFX-BioDn-3_at 3002.3 P 0.000258
AFFX-CreX-5_at 4926.2 P 0.000052
AFFX-CreX-3_at 8358.9 P 0.000044
AFFX-DapX-5_at 29.5 A 0.300606
AFFX-DapX-M_at 52.8 A 0.185131
AFFX-DapX-3_at 11.4 A 0.724854
AFFX-LysX-5_at 16.2 A 0.544587
AFFX-LysX-M_at 34.6 A 0.603080
AFFX-LysX-3_at 12.4 A 0.139482
AFFX-PheX-5_at 5.9 A 0.824672
AFFX-PheX-M_at 6.8 A 0.843268
AFFX-PheX-3_at 60.6 A 0.396920
AFFX-ThrX-5_at 12.7 A 0.737173
AFFX-ThrX-M_at 46.8 A 0.139482

Total number of rows: 22690

Table truncated, full table size 629 Kbytes.




Supplementary data files not provided

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