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Status
Public on Mar 28, 2004
Title
Mouse Liver Male 1 (technical replicate)
Sample type
RNA
Source name
Mouse Liver
Organism
Mus musculus
Extracted molecule
total RNA
Description
Triple selected polyA RNA for liver, kidney, ovary, testis, was obtained from Ambion (Austin, TX). Total RNA was obtained form Ambion for hypothalamus samples. All RNA samples had an agilent ratio greater than 1 indicating that degradation had not occurred. All RNA samples were prepared from a pool of 10 different animals. The total RNA samples were labeled for hybridization onto the microarray according to affymetrix protocols listed at:http://keck.med.yale.edu/affymetrix/protocols Keywords = Sex Specific Transcription, Mouse, Affymetrix, Healthy Mammalian Tissue
Submission date
Mar 26, 2004
Last update date
May 27, 2005
Contact name
Joel Rozowsky
E-mail(s)
rozowsky@csb.yale.edu
Phone
203-432-5405
Organization name
Yale University
Department
Molecular Biophysics & Biochemistry
Lab
Gerstein Lab
Street address
266 Whitney Ave, Bass 437
City
New Haven
State/province
CT
ZIP/Postal code
06520
Country
USA
Platform ID
GPL339
Series (1)
GSE1148
Sex Specific Transciption in Mouse Tissues
Data table header descriptions
ID_REF
VALUE
MAS 5.0 Intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
185.0
P
0.030976
AFFX-BioB-M_at
290.8
P
0.001593
AFFX-BioB-3_at
164.7
P
0.011384
AFFX-BioC-5_at
511.0
P
0.000195
AFFX-BioC-3_at
337.7
P
0.000070
AFFX-BioDn-5_at
430.1
P
0.000127
AFFX-BioDn-3_at
3002.3
P
0.000258
AFFX-CreX-5_at
4926.2
P
0.000052
AFFX-CreX-3_at
8358.9
P
0.000044
AFFX-DapX-5_at
29.5
A
0.300606
AFFX-DapX-M_at
52.8
A
0.185131
AFFX-DapX-3_at
11.4
A
0.724854
AFFX-LysX-5_at
16.2
A
0.544587
AFFX-LysX-M_at
34.6
A
0.603080
AFFX-LysX-3_at
12.4
A
0.139482
AFFX-PheX-5_at
5.9
A
0.824672
AFFX-PheX-M_at
6.8
A
0.843268
AFFX-PheX-3_at
60.6
A
0.396920
AFFX-ThrX-5_at
12.7
A
0.737173
AFFX-ThrX-M_at
46.8
A
0.139482
Total number of rows: 22690 Table truncated, full table size 629 Kbytes .Supplementary data files not provided