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Sample GSM19238 Query DataSets for GSM19238
Status Public on Mar 28, 2004
Title Mouse Liver Female 3 (technical replicate)
Sample type RNA
 
Source name Mouse Liver
Organism Mus musculus
Extracted molecule total RNA
 
Description Triple selected polyA RNA for liver, kidney, ovary,
testis, was obtained from Ambion (Austin, TX). Total
RNA was obtained form Ambion for hypothalamus samples.
All RNA samples had an agilent ratio greater
than 1 indicating that degradation had not occurred.
All RNA samples were prepared from a pool of 10
different animals. The total RNA samples were
labeled for hybridization onto the microarray according
to affymetrix protocols listed at:
http://keck.med.yale.edu/affymetrix/protocols
Keywords = Sex Specific Transcription, Mouse, Affymetrix, Healthy Mammalian Tissue
 
Submission date Mar 26, 2004
Last update date May 27, 2005
Contact name Joel Rozowsky
E-mail(s) rozowsky@csb.yale.edu
Phone 203-432-5405
Organization name Yale University
Department Molecular Biophysics & Biochemistry
Lab Gerstein Lab
Street address 266 Whitney Ave, Bass 437
City New Haven
State/province CT
ZIP/Postal code 06520
Country USA
 
Platform ID GPL339
Series (1)
GSE1148 Sex Specific Transciption in Mouse Tissues

Data table header descriptions
ID_REF
VALUE MAS 5.0 Intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 167.3 P 0.009337
AFFX-BioB-M_at 456.5 P 0.001248
AFFX-BioB-3_at 192.5 P 0.000662
AFFX-BioC-5_at 652.0 P 0.000127
AFFX-BioC-3_at 442.6 P 0.000052
AFFX-BioDn-5_at 625.8 P 0.000081
AFFX-BioDn-3_at 3481.4 P 0.000110
AFFX-CreX-5_at 5710.7 P 0.000044
AFFX-CreX-3_at 9964.9 P 0.000044
AFFX-DapX-5_at 12.9 A 0.425962
AFFX-DapX-M_at 49.4 M 0.062929
AFFX-DapX-3_at 19.2 A 0.645559
AFFX-LysX-5_at 5.6 A 0.588620
AFFX-LysX-M_at 5.7 A 0.699394
AFFX-LysX-3_at 2.9 A 0.672921
AFFX-PheX-5_at 7.4 A 0.724854
AFFX-PheX-M_at 3.1 A 0.843268
AFFX-PheX-3_at 35.4 A 0.514890
AFFX-ThrX-5_at 5.5 A 0.749204
AFFX-ThrX-M_at 14.1 A 0.631562

Total number of rows: 22690

Table truncated, full table size 628 Kbytes.




Supplementary data files not provided

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