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Status
Public on Mar 28, 2004
Title
Mouse Kidney Male 1 (technical replicate)
Sample type
RNA
Source name
Mouse Kidney
Organism
Mus musculus
Extracted molecule
total RNA
Description
Triple selected polyA RNA for liver, kidney, ovary, testis, was obtained from Ambion (Austin, TX). Total RNA was obtained form Ambion for hypothalamus samples. All RNA samples had an agilent ratio greater than 1 indicating that degradation had not occurred. All RNA samples were prepared from a pool of 10 different animals. The total RNA samples were labeled for hybridization onto the microarray according to affymetrix protocols listed at:http://keck.med.yale.edu/affymetrix/protocols Keywords = Sex Specific Transcription, Mouse, Affymetrix, Healthy Mammalian Tissue
Submission date
Mar 26, 2004
Last update date
May 27, 2005
Contact name
Joel Rozowsky
E-mail(s)
rozowsky@csb.yale.edu
Phone
203-432-5405
Organization name
Yale University
Department
Molecular Biophysics & Biochemistry
Lab
Gerstein Lab
Street address
266 Whitney Ave, Bass 437
City
New Haven
State/province
CT
ZIP/Postal code
06520
Country
USA
Platform ID
GPL339
Series (1)
GSE1148
Sex Specific Transciption in Mouse Tissues
Data table header descriptions
ID_REF
VALUE
MAS 5.0 Intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
168.9
P
0.016670
AFFX-BioB-M_at
277.1
P
0.003595
AFFX-BioB-3_at
126.1
P
0.002275
AFFX-BioC-5_at
445.4
P
0.000169
AFFX-BioC-3_at
353.0
P
0.000110
AFFX-BioDn-5_at
326.3
P
0.000127
AFFX-BioDn-3_at
2365.8
P
0.000340
AFFX-CreX-5_at
3240.7
P
0.000044
AFFX-CreX-3_at
6246.8
P
0.000044
AFFX-DapX-5_at
6.0
A
0.354453
AFFX-DapX-M_at
24.4
A
0.354453
AFFX-DapX-3_at
13.7
A
0.672921
AFFX-LysX-5_at
7.3
A
0.737173
AFFX-LysX-M_at
5.8
A
0.843268
AFFX-LysX-3_at
5.8
A
0.617401
AFFX-PheX-5_at
3.6
A
0.932322
AFFX-PheX-M_at
5.0
A
0.783476
AFFX-PheX-3_at
39.9
A
0.470241
AFFX-ThrX-5_at
3.5
A
0.941556
AFFX-ThrX-M_at
36.7
A
0.287743
Total number of rows: 22690 Table truncated, full table size 628 Kbytes .Supplementary data files not provided