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Status
Public on Mar 28, 2004
Title
Mouse Testis 1 (technical replicate)
Sample type
RNA
Source name
Mouse Testis
Organism
Mus musculus
Extracted molecule
total RNA
Description
Triple selected polyA RNA for liver, kidney, ovary, testis, was obtained from Ambion (Austin, TX). Total RNA was obtained form Ambion for hypothalamus samples. All RNA samples had an agilent ratio greater than 1 indicating that degradation had not occurred. All RNA samples were prepared from a pool of 10 different animals. The total RNA samples were labeled for hybridization onto the microarray according to affymetrix protocols listed at:http://keck.med.yale.edu/affymetrix/protocols Keywords = Sex Specific Transcription, Mouse, Affymetrix, Healthy Mammalian Tissue
Submission date
Mar 26, 2004
Last update date
May 27, 2005
Contact name
Joel Rozowsky
E-mail(s)
rozowsky@csb.yale.edu
Phone
203-432-5405
Organization name
Yale University
Department
Molecular Biophysics & Biochemistry
Lab
Gerstein Lab
Street address
266 Whitney Ave, Bass 437
City
New Haven
State/province
CT
ZIP/Postal code
06520
Country
USA
Platform ID
GPL339
Series (1)
GSE1148
Sex Specific Transciption in Mouse Tissues
Data table header descriptions
ID_REF
VALUE
MAS 5.0 Intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
270.6
P
0.042962
AFFX-BioB-M_at
325.5
P
0.001410
AFFX-BioB-3_at
154.6
M
0.062929
AFFX-BioC-5_at
635.2
P
0.000195
AFFX-BioC-3_at
325.9
P
0.000754
AFFX-BioDn-5_at
405.5
P
0.002023
AFFX-BioDn-3_at
2982.5
P
0.000972
AFFX-CreX-5_at
4425.4
P
0.000052
AFFX-CreX-3_at
6786.7
P
0.000044
AFFX-DapX-5_at
30.2
A
0.262827
AFFX-DapX-M_at
45.7
A
0.156732
AFFX-DapX-3_at
18.4
A
0.834139
AFFX-LysX-5_at
21.8
A
0.737173
AFFX-LysX-M_at
56.3
A
0.645547
AFFX-LysX-3_at
7.2
A
0.470241
AFFX-PheX-5_at
9.6
A
0.804734
AFFX-PheX-M_at
79.2
A
0.514890
AFFX-PheX-3_at
26.3
A
0.699394
AFFX-ThrX-5_at
10.8
A
0.834139
AFFX-ThrX-M_at
50.6
A
0.411380
Total number of rows: 22690 Table truncated, full table size 629 Kbytes .Supplementary data files not provided