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Sample GSM1940935 Query DataSets for GSM1940935
Status Public on Jul 22, 2016
Title P#390_Sarcoid
Sample type RNA
 
Source name BAL cells, Sarcoid
Organism Homo sapiens
Characteristics individual: Sarcoidosis Patient
cell type: BAL cells
Treatment protocol BAL cells were isolated from BAL fluid by centrifugation at 1,000 g for 10 minutes at 4°C. BAL cells were washed with hanks balanced salt solution, resuspended and counted with a hemocytometer. Mean viability of lavage cells was > 95% as determined by trypan blue dye exclusion.
Growth protocol None
Extracted molecule total RNA
Extraction protocol RNeasy Mini Kit (Qiagen, Valencia, CA)
Label Biotin
Label protocol Affymetrix standard protocol
 
Hybridization protocol Affymetrix standard protocol
Scan protocol GeneChip Operating System (GCOS)
Data processing RMA algorithm with quantile normalization and background correction
 
Submission date Nov 16, 2015
Last update date Oct 19, 2022
Contact name Sina Gharib
E-mail(s) sagharib@uw.edu
Organization name University of Washington
Department Medicine
Street address 850 Republican St.
City Seattle
State/province WA
ZIP/Postal code 98109
Country USA
 
Platform ID GPL571
Series (1)
GSE75023 Transcriptional profle of bronchoalveolar cells in sarcoidosis

Data table header descriptions
ID_REF
VALUE Natural scale RMA signal

Data table
ID_REF VALUE
1007_s_at 272.811219
1053_at 753.366899
117_at 715.458746
121_at 839.6591
1255_g_at 20.634381
1294_at 666.775452
1316_at 92.522739
1320_at 67.259759
1405_i_at 501.743943
1431_at 26.172132
1438_at 76.70112
1487_at 641.248675
1494_f_at 87.569868
1598_g_at 372.645105
160020_at 252.282468
1729_at 1087.550782
177_at 236.682567
1773_at 169.764141
179_at 893.690315
1861_at 212.917601

Total number of rows: 22277

Table truncated, full table size 471 Kbytes.




Supplementary file Size Download File type/resource
GSM1940935_P_390_Sarcoid.CEL.gz 2.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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