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GEO accession:
Sample GSM1942157
Query DataSets for GSM1942157
Status
Public on Dec 18, 2015
Title
H229_BS_850k
Sample type
genomic
Source name
H229_BS
Organism
Homo sapiens
Characteristics
primary site: Brain
primary histology: Sorted Neurons
Extracted molecule
genomic DNA
Extraction protocol
Total DNA was isolated by standard procedures
Label
Cy3, Cy5
Label protocol
Standard Illumina labelling protocol
Hybridization protocol
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Description
Infinium MethylationEpic
Data processing
Genome Studio V2011.2
Submission date
Nov 17, 2015
Last update date
Dec 18, 2015
Contact name
Sebastian Moran
Organization name
IDIBELL
Department
PEBC
Street address
Av. Gran Via de l'Hospitalet, 199-203
City
L'Hospitalet del Llobregat
State/province
Barcelona
ZIP/Postal code
08908
Country
Spain
Platform ID
GPL21145
Series (1)
GSE75073
Validation of a DNA methylation microarray for 850,000 CpG sites of the human genome enriched in enhancer sequences
Data table header descriptions
ID_REF
VALUE
Average Beta, Detection P-value
H229_BS.Detection Pval
Data table
ID_REF
VALUE
H229_BS.Detection Pval
cg00000029
0.4572715
0.00
cg00000103
0.7777277
0.00
cg00000109
0.8035626
0.00
cg00000155
0.8459574
0.00
cg00000158
0.8398614
0.00
cg00000165
0.1193591
0.00
cg00000221
0.7357611
0.00
cg00000236
0.7247547
0.00
cg00000289
0.7335151
0.00
cg00000292
0.803875
0.00
cg00000321
0.5857839
0.00
cg00000363
0.07860868
0.00
cg00000540
0.8711485
0.00
cg00000579
0.8741254
0.00
cg00000596
0.7879834
0.00
cg00000622
0.01605264
0.00
cg00000658
0.6796811
0.00
cg00000714
0.07805542
0.00
cg00000721
0.8407211
0.00
cg00000734
0.08724686
0.00
Total number of rows:
856246
Table truncated, full table size
22092 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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