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GEO accession:
Sample GSM194375
Query DataSets for GSM194375
Status
Public on Mar 05, 2010
Title
lung_CIS-1
Sample type
SAGE
Anchor
NlaIII
Tag Count
163460
Tag Length
10
Source name
lung
Organism
Homo sapiens
Characteristics
Non-small cell lung cancer: squamous cell carcinoma-in-situ
Extracted molecule
polyA RNA
Extraction protocol
MicroSAGE protocol: annealing to oligo (dT) magnetic beads
Description
Biopsy material
Submission date
May 24, 2007
Last update date
Mar 05, 2009
Contact name
Kim Marie Lonergan
E-mail(s)
klonergan@bccrc.ca
Phone
604-675-8111
Fax
604-675-8185
Organization name
British Columbia Cancer Research Centre
Department
Cancer Genetics and Developmental Biology
Lab
Dr. Wan L Lam
Street address
675 West 10th Avenue
City
Vancouver
State/province
British Columbia
ZIP/Postal code
V5Z 1L3
Country
Canada
Platform ID
GPL4
Series (1)
GSE7898
Expression profiling of early-stage squamous cell non-small cell lung cancer.
Data table header descriptions
TAG
tag
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
GATCTCTTGG
3630
22207.27
CTTCCTTGCC
3454
21130.55
AAAAAAAAAA
1895
11593.05
ACTTTTTCAA
1887
11544.11
TTTCCTGCTC
1620
9910.68
CCACTGCACT
1499
9170.44
ATAATTCTTT
1334
8161.02
TACCTGCAGA
1081
6613.24
GTGAAACCCC
995
6087.12
TAATAAAGGT
926
5664.99
CTGGGTTAAT
839
5132.75
CCCATCGTCC
786
4808.52
AGAAAGATGT
752
4600.51
TAGGTTGTCT
716
4380.28
CCTGTAATCC
709
4337.45
AAAGCACAAG
707
4325.22
TTCAATAAAA
673
4117.22
TACCATCAAT
662
4049.92
GTGAAACCCT
635
3884.74
AACCCGGGAA
594
3633.92
Total number of rows:
40983
Table truncated, full table size
735 Kbytes
.
Supplementary data files not provided
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