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GEO accession:
Sample GSM194378
Query DataSets for GSM194378
Status
Public on Mar 05, 2010
Title
lung_CIS-4
Sample type
SAGE
Anchor
NlaIII
Tag Count
174246
Tag Length
10
Source name
lung
Organism
Homo sapiens
Characteristics
Non-small cell lung cancer: squamous cell carcinoma-in-situ
Extracted molecule
polyA RNA
Extraction protocol
MicroSAGE protocol: annealing to oligo (dT) magnetic beads
Description
Biopsy material
Submission date
May 24, 2007
Last update date
Mar 05, 2009
Contact name
Kim Marie Lonergan
E-mail(s)
klonergan@bccrc.ca
Phone
604-675-8111
Fax
604-675-8185
Organization name
British Columbia Cancer Research Centre
Department
Cancer Genetics and Developmental Biology
Lab
Dr. Wan L Lam
Street address
675 West 10th Avenue
City
Vancouver
State/province
British Columbia
ZIP/Postal code
V5Z 1L3
Country
Canada
Platform ID
GPL4
Series (1)
GSE7898
Expression profiling of early-stage squamous cell non-small cell lung cancer.
Data table header descriptions
TAG
tag
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
GAAATAAAGC
11010
63186.53
AAACCCCAAT
1604
9205.38
AAAAAAAAAA
1298
7449.24
AAGGGAGCAC
1137
6525.26
CTTCCTTGCC
1104
6335.87
TTCAATAAAA
1013
5813.62
GAGGGAGTTT
860
4935.55
TTGGGGTTTC
851
4883.90
CTGGGTTAAT
807
4631.38
TACCTGCAGA
783
4493.65
CAATAAATGT
779
4470.69
ATAATTCTTT
746
4281.30
TAGGTTGTCT
729
4183.74
TACCATCAAT
655
3759.05
TAATAAAGGT
626
3592.62
ACTTTTTCAA
596
3420.45
GGATTTGGCC
583
3345.84
CTCCCCCAAG
547
3139.24
TTCATACACC
534
3064.63
GCATAATAGG
517
2967.07
Total number of rows:
42818
Table truncated, full table size
770 Kbytes
.
Supplementary data files not provided
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