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GEO accession:
Sample GSM194379
Query DataSets for GSM194379
Status
Public on Mar 05, 2010
Title
lung_CIS-5
Sample type
SAGE
Anchor
NlaIII
Tag Count
211034
Tag Length
10
Source name
lung
Organism
Homo sapiens
Characteristics
Non-small cell lung cancer: squamous cell carcinoma-in-situ
Extracted molecule
polyA RNA
Extraction protocol
MicroSAGE protocol: annealing to oligo (dT) magnetic beads
Description
Biopsy material
Submission date
May 24, 2007
Last update date
Mar 05, 2009
Contact name
Kim Marie Lonergan
E-mail(s)
klonergan@bccrc.ca
Phone
604-675-8111
Fax
604-675-8185
Organization name
British Columbia Cancer Research Centre
Department
Cancer Genetics and Developmental Biology
Lab
Dr. Wan L Lam
Street address
675 West 10th Avenue
City
Vancouver
State/province
British Columbia
ZIP/Postal code
V5Z 1L3
Country
Canada
Platform ID
GPL4
Series (1)
GSE7898
Expression profiling of early-stage squamous cell non-small cell lung cancer.
Data table header descriptions
TAG
tag
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
ACTTTTTCAA
2655
12580.91
ATAATTCTTT
2319
10988.75
CTTCCTTGCC
2279
10799.21
AAAAAAAAAA
2198
10415.38
TTCAATAAAA
1643
7785.48
TAGGTTGTCT
1621
7681.23
TTCATACACC
1596
7562.76
CTGGGTTAAT
1146
5430.40
GAGGGAGTTT
1124
5326.16
CCCATCGTCC
1021
4838.08
GATCTCTTGG
986
4672.23
TCTCCATACC
940
4454.26
TTGGTCCTCT
879
4165.21
GTTGTGGTTA
828
3923.54
CACCTAATTG
785
3719.78
GGATTTGGCC
773
3662.92
TTGGGGTTTC
740
3506.54
GAAAAATGGT
720
3411.77
CAATAAATGT
685
3245.92
GCATAATAGG
667
3160.63
Total number of rows:
48018
Table truncated, full table size
858 Kbytes
.
Supplementary data files not provided
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