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GEO accession:
Sample GSM194384
Query DataSets for GSM194384
Status
Public on Mar 05, 2010
Title
lung_SqCC-5
Sample type
SAGE
Anchor
NlaIII
Tag Count
152786
Tag Length
10
Source name
lung
Organism
Homo sapiens
Characteristics
Non-small cell lung cancer: invasive squamous cell carcinoma
Extracted molecule
polyA RNA
Extraction protocol
MicroSAGE protocol: annealing to oligo (dT) magnetic beads
Description
Biopsy material
Submission date
May 24, 2007
Last update date
Mar 05, 2009
Contact name
Kim Marie Lonergan
E-mail(s)
klonergan@bccrc.ca
Phone
604-675-8111
Fax
604-675-8185
Organization name
British Columbia Cancer Research Centre
Department
Cancer Genetics and Developmental Biology
Lab
Dr. Wan L Lam
Street address
675 West 10th Avenue
City
Vancouver
State/province
British Columbia
ZIP/Postal code
V5Z 1L3
Country
Canada
Platform ID
GPL4
Series (1)
GSE7898
Expression profiling of early-stage squamous cell non-small cell lung cancer.
Data table header descriptions
TAG
tag
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
GAAATAAAGC
4166
27266.90
ATAATTCTTT
1659
10858.32
CTGGGTTAAT
1454
9516.58
TTCAATAAAA
1367
8947.15
CCCATCGTCC
1246
8155.20
TACCATCAAT
1124
7356.69
GAAAAATGGT
1001
6551.65
TTGGGGTTTC
939
6145.85
AGGAAAGCTG
915
5988.77
TTCATACACC
908
5942.95
GTGACCACGG
904
5916.77
CAATAAATGT
768
5026.64
AAGGGAGCAC
743
4863.01
CACCTAATTG
660
4319.77
GGATTTGGCC
649
4247.77
AAGGTGGAGG
626
4097.23
CTTCCTTGCC
619
4051.42
AGCCCTACAA
595
3894.34
CCCTGGGTTC
568
3717.62
GAAATACAGT
543
3553.99
Total number of rows:
35060
Table truncated, full table size
630 Kbytes
.
Supplementary data files not provided
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