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GEO accession:
Sample GSM194385
Query DataSets for GSM194385
Status
Public on Mar 05, 2010
Title
lung_SqCC-6
Sample type
SAGE
Anchor
NlaIII
Tag Count
150233
Tag Length
10
Source name
lung
Organism
Homo sapiens
Characteristics
Non-small cell lung cancer: invasive squamous cell carcinoma
Extracted molecule
polyA RNA
Extraction protocol
MicroSAGE protocol: annealing to oligo (dT) magnetic beads
Description
Biopsy material
Submission date
May 24, 2007
Last update date
Mar 05, 2009
Contact name
Kim Marie Lonergan
E-mail(s)
klonergan@bccrc.ca
Phone
604-675-8111
Fax
604-675-8185
Organization name
British Columbia Cancer Research Centre
Department
Cancer Genetics and Developmental Biology
Lab
Dr. Wan L Lam
Street address
675 West 10th Avenue
City
Vancouver
State/province
British Columbia
ZIP/Postal code
V5Z 1L3
Country
Canada
Platform ID
GPL4
Series (1)
GSE7898
Expression profiling of early-stage squamous cell non-small cell lung cancer.
Data table header descriptions
TAG
tag
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
GAAATAAAGC
4151
27630.41
AAAAAAAAAA
1382
9199.04
AAGGGAGCAC
1185
7887.75
TACCATCAAT
1113
7408.49
CTGGGTTAAT
1055
7022.43
CAATAAATGT
1003
6676.30
CCCATCGTCC
972
6469.95
ATAATTCTTT
965
6423.36
TTCATACACC
954
6350.14
CTCCCCCAAG
952
6336.82
TTGGGGTTTC
918
6110.51
TTCAATAAAA
898
5977.38
CTCCCCCAAA
872
5804.32
ACTTTTTCAA
811
5398.28
TAGGTTGTCT
764
5085.43
GTTGTGGTTA
753
5012.21
GTTCACATTA
751
4998.90
GATCTCTTGG
674
4486.36
CTCCCAGCCA
611
4067.02
CTTCCTTGCC
597
3973.83
Total number of rows:
34437
Table truncated, full table size
620 Kbytes
.
Supplementary data files not provided
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