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Sample GSM195130 Query DataSets for GSM195130
Status Public on Jun 22, 2009
Title ESC Stella- rep1
Sample type RNA
 
Source name Stella GFP-negative ESCs
Organism Mus musculus
Characteristics B6CBA, Adherant culture/MEFs/Pluripotent Conditions
Extracted molecule total RNA
Extraction protocol Trizol/Qiagen RNAeasy according to the manufacturers protocol.
Label Biotin
Label protocol Biotin labeled, performed and described at the Microarray Core Facility website of the Dana-Farber Cancer Institute
 
Hybridization protocol Please seethe Microarray Core Facility website of the Dana-Farber Cancer Institutefor details.
Scan protocol confocal laser scanner. Please see theMicroarray Core Facility website of the Dana-Farber Cancer Institute
Description no additional info
Data processing The data were analyzed with MAS 5.0 using Affymetrix default analysis settings. Please see the Microarray Core Facility website of the Dana-Farber Cancer Institutefor more details
 
Submission date May 29, 2007
Last update date Aug 28, 2018
Contact name Jason Allen West
E-mail(s) jasonallenwest@gmail.com
Organization name Children's Hospital, Boston
Street address One Blackfan Circle Room 7004B
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL1261
Series (1)
GSE7948 In vitro modeling of primordial germ cell development
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 277.587 P 0.000509415
AFFX-BioB-M_at 488.795 P 4.42873e-05
AFFX-BioB-3_at 242.132 P 4.42873e-05
AFFX-BioC-5_at 1012.51 P 5.16732e-05
AFFX-BioC-3_at 1077.42 P 4.42873e-05
AFFX-BioDn-5_at 1540.56 P 4.42873e-05
AFFX-BioDn-3_at 4629.25 P 7.00668e-05
AFFX-CreX-5_at 9135.44 P 5.16732e-05
AFFX-CreX-3_at 9554.61 P 4.42873e-05
AFFX-DapX-5_at 14.1859 A 0.175328
AFFX-DapX-M_at 17.3819 A 0.147939
AFFX-DapX-3_at 1.46993 A 0.969024
AFFX-LysX-5_at 5.48785 A 0.41138
AFFX-LysX-M_at 10.9215 A 0.772383
AFFX-LysX-3_at 11.5004 A 0.131361
AFFX-PheX-5_at 1.7426 A 0.910522
AFFX-PheX-M_at 2.19985 A 0.804734
AFFX-PheX-3_at 8.278 A 0.52976
AFFX-ThrX-5_at 4.66508 A 0.5
AFFX-ThrX-M_at 1.59145 A 0.794268

Total number of rows: 45101

Table truncated, full table size 1379 Kbytes.




Supplementary file Size Download File type/resource
GSM195130.CEL.gz 3.9 Mb (ftp)(http) CEL
GSM195130.CHP.gz 242.4 Kb (ftp)(http) CHP
GSM195130.EXP.gz 508 b (ftp)(http) EXP
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

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