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Sample GSM195131 Query DataSets for GSM195131
Status Public on Jun 22, 2009
Title ESC Stella- rep2
Sample type RNA
 
Source name Stella GFP-negative ESCs
Organism Mus musculus
Characteristics B6CBA, Adherant culture/MEFs/Pluripotent Conditions
Extracted molecule total RNA
Extraction protocol Trizol/Qiagen RNAeasy according to the manufacturers protocol.
Label Biotin
Label protocol Biotin labeled, performed and described at the Microarray Core Facility website of the Dana-Farber Cancer Institute
 
Hybridization protocol Please seethe Microarray Core Facility website of the Dana-Farber Cancer Institutefor details.
Scan protocol confocal laser scanner. Please see theMicroarray Core Facility website of the Dana-Farber Cancer Institute
Description no additional info
Data processing The data were analyzed with MAS 5.0 using Affymetrix default analysis settings. Please see the Microarray Core Facility website of the Dana-Farber Cancer Institutefor more details
 
Submission date May 29, 2007
Last update date Aug 28, 2018
Contact name Jason Allen West
E-mail(s) jasonallenwest@gmail.com
Organization name Children's Hospital, Boston
Street address One Blackfan Circle Room 7004B
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL1261
Series (1)
GSE7948 In vitro modeling of primordial germ cell development
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 247.569 P 0.000389797
AFFX-BioB-M_at 355.239 P 4.42246e-05
AFFX-BioB-3_at 185.992 P 7.00668e-05
AFFX-BioC-5_at 869.377 P 5.16732e-05
AFFX-BioC-3_at 936.947 P 4.42873e-05
AFFX-BioDn-5_at 1174.6 P 4.42873e-05
AFFX-BioDn-3_at 4083.12 P 8.14279e-05
AFFX-CreX-5_at 8059.42 P 5.16732e-05
AFFX-CreX-3_at 8881.61 P 4.42873e-05
AFFX-DapX-5_at 11.29 A 0.227636
AFFX-DapX-M_at 7.77974 A 0.340648
AFFX-DapX-3_at 2.85997 A 0.843268
AFFX-LysX-5_at 1.34837 A 0.559354
AFFX-LysX-M_at 3.49403 A 0.712257
AFFX-LysX-3_at 1.59501 A 0.824672
AFFX-PheX-5_at 2.99389 A 0.794268
AFFX-PheX-M_at 1.46227 A 0.921998
AFFX-PheX-3_at 5.42939 A 0.804734
AFFX-ThrX-5_at 18.2895 A 0.250796
AFFX-ThrX-M_at 10.9019 A 0.250796

Total number of rows: 45101

Table truncated, full table size 1378 Kbytes.




Supplementary file Size Download File type/resource
GSM195131.CEL.gz 4.0 Mb (ftp)(http) CEL
GSM195131.CHP.gz 242.9 Kb (ftp)(http) CHP
GSM195131.EXP.gz 508 b (ftp)(http) EXP
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

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