GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM195132 Query DataSets for GSM195132
Status Public on Jun 22, 2009
Title ESC Stella- rep3
Sample type RNA
Source name Stella GFP-negative ESCs
Organism Mus musculus
Characteristics B6CBA, Adherant culture/MEFs/Pluripotent Conditions
Extracted molecule total RNA
Extraction protocol Trizol/Qiagen RNAeasy according to the manufacturers protocol.
Label Biotin
Label protocol Biotin labeled, performed and described at the Microarray Core Facility website of the Dana-Farber Cancer Institute
Hybridization protocol Please seethe Microarray Core Facility website of the Dana-Farber Cancer Institutefor details.
Scan protocol confocal laser scanner. Please see theMicroarray Core Facility website of the Dana-Farber Cancer Institute
Description no additional info
Data processing The data were analyzed with MAS 5.0 using Affymetrix default analysis settings. Please see the Microarray Core Facility website of the Dana-Farber Cancer Institutefor more details
Submission date May 29, 2007
Last update date Aug 28, 2018
Contact name Jason Allen West
Organization name Children's Hospital, Boston
Street address One Blackfan Circle Room 7004B
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL1261
Series (1)
GSE7948 In vitro modeling of primordial germ cell development
Reanalyzed by GSE119085

Data table header descriptions
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)

Data table
AFFX-BioB-5_at 297.889 P 7.00668e-05
AFFX-BioB-M_at 464.707 P 4.42873e-05
AFFX-BioB-3_at 313.886 P 4.42873e-05
AFFX-BioC-5_at 1007.17 P 5.16732e-05
AFFX-BioC-3_at 1089.37 P 4.42873e-05
AFFX-BioDn-5_at 1824.17 P 4.42873e-05
AFFX-BioDn-3_at 5337.24 P 7.00668e-05
AFFX-CreX-5_at 9911.05 P 5.16732e-05
AFFX-CreX-3_at 10484.1 P 4.42873e-05
AFFX-DapX-5_at 10.1442 A 0.147939
AFFX-DapX-M_at 4.45387 A 0.41138
AFFX-DapX-3_at 3.65162 A 0.659339
AFFX-LysX-5_at 0.955225 A 0.891021
AFFX-LysX-M_at 2.97502 A 0.852061
AFFX-LysX-3_at 0.811717 A 0.84329
AFFX-PheX-5_at 1.10553 A 0.921998
AFFX-PheX-M_at 1.00756 A 0.910522
AFFX-PheX-3_at 2.69818 A 0.868639
AFFX-ThrX-5_at 14.637 A 0.574038
AFFX-ThrX-M_at 1.90965 A 0.631562

Total number of rows: 45101

Table truncated, full table size 1376 Kbytes.

Supplementary file Size Download File type/resource
GSM195132.CEL.gz 3.8 Mb (ftp)(http) CEL
GSM195132.CHP.gz 244.2 Kb (ftp)(http) CHP
GSM195132.EXP.gz 509 b (ftp)(http) EXP
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap