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Sample GSM195135 Query DataSets for GSM195135
Status Public on Jun 22, 2009
Title ESC rep1
Sample type RNA
 
Source name Stella ESCs (unsorted population)
Organism Mus musculus
Characteristics B6CBA, Adherant culture/MEFs/Pluripotent Conditions
Extracted molecule total RNA
Extraction protocol Trizol/Qiagen RNAeasy according to the manufacturers protocol.
Label Biotin
Label protocol Biotin labeled, performed and described at the Microarray Core Facility website of the Dana-Farber Cancer Institute
 
Hybridization protocol Please seethe Microarray Core Facility website of the Dana-Farber Cancer Institutefor details.
Scan protocol confocal laser scanner. Please see theMicroarray Core Facility website of the Dana-Farber Cancer Institute
Description no additional info
Data processing The data were analyzed with MAS 5.0 using Affymetrix default analysis settings. Please see the Microarray Core Facility website of the Dana-Farber Cancer Institutefor more details
 
Submission date May 29, 2007
Last update date Aug 28, 2018
Contact name Jason Allen West
E-mail(s) jasonallenwest@gmail.com
Organization name Children's Hospital, Boston
Street address One Blackfan Circle Room 7004B
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL1261
Series (1)
GSE7948 In vitro modeling of primordial germ cell development
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 158.116 P 0.000856509
AFFX-BioB-M_at 216.459 P 9.4506e-05
AFFX-BioB-3_at 94.7781 P 4.42873e-05
AFFX-BioC-5_at 464.301 P 5.16732e-05
AFFX-BioC-3_at 622.439 P 4.42873e-05
AFFX-BioDn-5_at 729.159 P 4.42873e-05
AFFX-BioDn-3_at 2678.51 P 5.16732e-05
AFFX-CreX-5_at 4939.72 P 5.16732e-05
AFFX-CreX-3_at 6214.25 P 4.42873e-05
AFFX-DapX-5_at 5.1462 A 0.440646
AFFX-DapX-M_at 7.92121 A 0.313723
AFFX-DapX-3_at 1.30411 A 0.945802
AFFX-LysX-5_at 4.83899 A 0.52976
AFFX-LysX-M_at 1.27268 A 0.868639
AFFX-LysX-3_at 4.8652 A 0.0676785
AFFX-PheX-5_at 1.1316 A 0.814869
AFFX-PheX-M_at 1.17623 A 0.737191
AFFX-PheX-3_at 2.99637 A 0.617401
AFFX-ThrX-5_at 9.88386 A 0.205732
AFFX-ThrX-M_at 3.24718 A 0.529762

Total number of rows: 45101

Table truncated, full table size 1373 Kbytes.




Supplementary file Size Download File type/resource
GSM195135.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM195135.CHP.gz 246.6 Kb (ftp)(http) CHP
GSM195135.EXP.gz 510 b (ftp)(http) EXP
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

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