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Sample GSM195136 Query DataSets for GSM195136
Status Public on Jun 22, 2009
Title ESC rep2
Sample type RNA
 
Source name Stella ESCs (unsorted population)
Organism Mus musculus
Characteristics B6CBA, Adherant culture/MEFs/Pluripotent Conditions
Extracted molecule total RNA
Extraction protocol Trizol/Qiagen RNAeasy according to the manufacturers protocol.
Label Biotin
Label protocol Biotin labeled, performed and described at the Microarray Core Facility website of the Dana-Farber Cancer Institute
 
Hybridization protocol Please seethe Microarray Core Facility website of the Dana-Farber Cancer Institutefor details.
Scan protocol confocal laser scanner. Please see theMicroarray Core Facility website of the Dana-Farber Cancer Institute
Description no additional info
Data processing The data were analyzed with MAS 5.0 using Affymetrix default analysis settings. Please see the Microarray Core Facility website of the Dana-Farber Cancer Institutefor more details
 
Submission date May 29, 2007
Last update date Aug 28, 2018
Contact name Jason Allen West
E-mail(s) jasonallenwest@gmail.com
Organization name Children's Hospital, Boston
Street address One Blackfan Circle Room 7004B
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL1261
Series (1)
GSE7948 In vitro modeling of primordial germ cell development
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 142.408 P 0.000753643
AFFX-BioB-M_at 237.215 P 5.16732e-05
AFFX-BioB-3_at 115.027 P 5.16732e-05
AFFX-BioC-5_at 471.749 P 5.16732e-05
AFFX-BioC-3_at 628.583 P 4.42873e-05
AFFX-BioDn-5_at 803.776 P 4.42873e-05
AFFX-BioDn-3_at 2937.59 P 6.02111e-05
AFFX-CreX-5_at 5173.12 P 5.16732e-05
AFFX-CreX-3_at 6431.66 P 4.42873e-05
AFFX-DapX-5_at 5.0898 A 0.368438
AFFX-DapX-M_at 7.58529 A 0.139482
AFFX-DapX-3_at 2.05101 A 0.814869
AFFX-LysX-5_at 1.34516 A 0.772383
AFFX-LysX-M_at 1.68865 A 0.891041
AFFX-LysX-3_at 2.22246 A 0.216504
AFFX-PheX-5_at 2.27321 A 0.51489
AFFX-PheX-M_at 5.84472 A 0.5
AFFX-PheX-3_at 3.57793 A 0.712257
AFFX-ThrX-5_at 4.50504 A 0.699394
AFFX-ThrX-M_at 5.14166 A 0.440646

Total number of rows: 45101

Table truncated, full table size 1371 Kbytes.




Supplementary file Size Download File type/resource
GSM195136.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM195136.CHP.gz 246.9 Kb (ftp)(http) CHP
GSM195136.EXP.gz 509 b (ftp)(http) EXP
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

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