GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM195137 Query DataSets for GSM195137
Status Public on Jun 22, 2009
Title D7 EB Stella- rep1
Sample type RNA
Source name StellaGFP-negative cells from Day 7 Ebs (not germ cells)
Organism Mus musculus
Characteristics B6CBA,Suspension culture/EB differentiation media
Extracted molecule total RNA
Extraction protocol Trizol/Qiagen RNAeasy according to the manufacturers protocol.
Label Biotin
Label protocol Biotin labeled, performed and described at the Microarray Core Facility website of the Dana-Farber Cancer Institute
Hybridization protocol Please seethe Microarray Core Facility website of the Dana-Farber Cancer Institutefor details.
Scan protocol confocal laser scanner. Please see theMicroarray Core Facility website of the Dana-Farber Cancer Institute
Description no additional info
Data processing The data were analyzed with MAS 5.0 using Affymetrix default analysis settings. Please see the Microarray Core Facility website of the Dana-Farber Cancer Institutefor more details
Submission date May 29, 2007
Last update date Aug 28, 2018
Contact name Jason Allen West
Organization name Children's Hospital, Boston
Street address One Blackfan Circle Room 7004B
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL1261
Series (1)
GSE7948 In vitro modeling of primordial germ cell development
Reanalyzed by GSE119085

Data table header descriptions
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)

Data table
AFFX-BioB-5_at 210.344 P 0.000856509
AFFX-BioB-M_at 242.01 P 5.16732e-05
AFFX-BioB-3_at 158.334 P 6.02111e-05
AFFX-BioC-5_at 609.635 P 6.02111e-05
AFFX-BioC-3_at 652.806 P 4.42873e-05
AFFX-BioDn-5_at 943.414 P 4.42873e-05
AFFX-BioDn-3_at 3105.66 P 4.42873e-05
AFFX-CreX-5_at 6182.17 P 5.16732e-05
AFFX-CreX-3_at 7255.82 P 4.42873e-05
AFFX-DapX-5_at 10.274 A 0.147939
AFFX-DapX-M_at 10.6248 A 0.287743
AFFX-DapX-3_at 2.45904 A 0.949771
AFFX-LysX-5_at 2.49092 A 0.60308
AFFX-LysX-M_at 13.2167 A 0.783476
AFFX-LysX-3_at 1.8822 A 0.574038
AFFX-PheX-5_at 0.587383 A 0.937087
AFFX-PheX-M_at 1.70131 A 0.843268
AFFX-PheX-3_at 3.90733 A 0.843268
AFFX-ThrX-5_at 3.59676 A 0.916408
AFFX-ThrX-M_at 4.81841 A 0.52976

Total number of rows: 45101

Table truncated, full table size 1357 Kbytes.

Supplementary file Size Download File type/resource
GSM195137.CEL.gz 3.6 Mb (ftp)(http) CEL
GSM195137.CHP.gz 246.6 Kb (ftp)(http) CHP
GSM195137.EXP.gz 511 b (ftp)(http) EXP
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap