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Sample GSM195138 Query DataSets for GSM195138
Status Public on Jun 22, 2009
Title D7 EB Stella- rep2
Sample type RNA
Source name StellaGFP-negative cells from Day 7 Ebs (not germ cells)
Organism Mus musculus
Characteristics B6CBA,Suspension culture/EB differentiation media
Extracted molecule total RNA
Extraction protocol Trizol/Qiagen RNAeasy according to the manufacturers protocol.
Label Biotin
Label protocol Biotin labeled, performed and described at the Microarray Core Facility website of the Dana-Farber Cancer Institute
Hybridization protocol Please seethe Microarray Core Facility website of the Dana-Farber Cancer Institutefor details.
Scan protocol confocal laser scanner. Please see theMicroarray Core Facility website of the Dana-Farber Cancer Institute
Description no additional info
Data processing The data were analyzed with MAS 5.0 using Affymetrix default analysis settings. Please see the Microarray Core Facility website of the Dana-Farber Cancer Institutefor more details
Submission date May 29, 2007
Last update date Aug 28, 2018
Contact name Jason Allen West
Organization name Children's Hospital, Boston
Street address One Blackfan Circle Room 7004B
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL1261
Series (1)
GSE7948 In vitro modeling of primordial germ cell development
Reanalyzed by GSE119085

Data table header descriptions
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)

Data table
AFFX-BioB-5_at 235.978 P 0.000856509
AFFX-BioB-M_at 353.51 P 5.16732e-05
AFFX-BioB-3_at 169.153 P 6.02111e-05
AFFX-BioC-5_at 743.996 P 5.16732e-05
AFFX-BioC-3_at 795.662 P 4.42873e-05
AFFX-BioDn-5_at 1067.02 P 4.42873e-05
AFFX-BioDn-3_at 3742.9 P 4.42873e-05
AFFX-CreX-5_at 7713.17 P 5.16732e-05
AFFX-CreX-3_at 8787.01 P 4.42873e-05
AFFX-DapX-5_at 0.800469 A 0.966323
AFFX-DapX-M_at 15.8227 A 0.156732
AFFX-DapX-3_at 4.06612 A 0.814869
AFFX-LysX-5_at 3.37923 A 0.354453
AFFX-LysX-M_at 3.46585 A 0.724854
AFFX-LysX-3_at 11.6698 A 0.123572
AFFX-PheX-5_at 1.25366 A 0.921998
AFFX-PheX-M_at 1.8545 A 0.860518
AFFX-PheX-3_at 10.8627 A 0.749204
AFFX-ThrX-5_at 3.50154 A 0.949771
AFFX-ThrX-M_at 0.935617 A 0.957038

Total number of rows: 45101

Table truncated, full table size 1359 Kbytes.

Supplementary file Size Download File type/resource
GSM195138.CEL.gz 3.7 Mb (ftp)(http) CEL
GSM195138.CHP.gz 246.3 Kb (ftp)(http) CHP
GSM195138.EXP.gz 512 b (ftp)(http) EXP
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

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