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Sample GSM195139 Query DataSets for GSM195139
Status Public on Jun 22, 2009
Title D7 EB Stella+ rep1
Sample type RNA
 
Source name StellaGFP-positve cells from Day 7 Ebs (in vitro PGCs)
Organism Mus musculus
Characteristics B6CBA,Suspension culture/EB differentiation media
Extracted molecule total RNA
Extraction protocol Trizol/Qiagen RNAeasy according to the manufacturers protocol.
Label Biotin
Label protocol Biotin labeled, performed and described at the Microarray Core Facility website of the Dana-Farber Cancer Institute
 
Hybridization protocol Please seethe Microarray Core Facility website of the Dana-Farber Cancer Institutefor details.
Scan protocol confocal laser scanner. Please see theMicroarray Core Facility website of the Dana-Farber Cancer Institute
Description no additional info
Data processing The data were analyzed with MAS 5.0 using Affymetrix default analysis settings. Please see the Microarray Core Facility website of the Dana-Farber Cancer Institutefor more details
 
Submission date May 29, 2007
Last update date Aug 28, 2018
Contact name Jason Allen West
E-mail(s) jasonallenwest@gmail.com
Organization name Children's Hospital, Boston
Street address One Blackfan Circle Room 7004B
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL1261
Series (1)
GSE7948 In vitro modeling of primordial germ cell development
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 284.449 P 0.000509415
AFFX-BioB-M_at 442.951 P 4.42873e-05
AFFX-BioB-3_at 292.218 P 4.42873e-05
AFFX-BioC-5_at 1000.94 P 5.16732e-05
AFFX-BioC-3_at 1094.18 P 4.42873e-05
AFFX-BioDn-5_at 1679.3 P 4.42873e-05
AFFX-BioDn-3_at 5034.27 P 4.42873e-05
AFFX-CreX-5_at 10091.4 P 5.16732e-05
AFFX-CreX-3_at 10750.5 P 4.42873e-05
AFFX-DapX-5_at 0.870628 A 0.559354
AFFX-DapX-M_at 12.6397 A 0.368438
AFFX-DapX-3_at 1.62729 A 0.868639
AFFX-LysX-5_at 1.83096 A 0.891021
AFFX-LysX-M_at 9.7341 A 0.58862
AFFX-LysX-3_at 7.36274 A 0.425962
AFFX-PheX-5_at 7.01998 A 0.313723
AFFX-PheX-M_at 3.0553 A 0.794268
AFFX-PheX-3_at 13.707 A 0.368438
AFFX-ThrX-5_at 3.27494 A 0.686277
AFFX-ThrX-M_at 8.61083 A 0.368438

Total number of rows: 45101

Table truncated, full table size 1368 Kbytes.




Supplementary file Size Download File type/resource
GSM195139.CEL.gz 3.6 Mb (ftp)(http) CEL
GSM195139.CHP.gz 246.5 Kb (ftp)(http) CHP
GSM195139.EXP.gz 512 b (ftp)(http) EXP
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

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