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Sample GSM195140 Query DataSets for GSM195140
Status Public on Jun 22, 2009
Title D7 EB Stella+ rep2
Sample type RNA
 
Source name StellaGFP-positve cells from Day 7 Ebs (in vitro PGCs)
Organism Mus musculus
Characteristics B6CBA,Suspension culture/EB differentiation media
Extracted molecule total RNA
Extraction protocol Trizol/Qiagen RNAeasy according to the manufacturers protocol.
Label Biotin
Label protocol Biotin labeled, performed and described at the Microarray Core Facility website of the Dana-Farber Cancer Institute
 
Hybridization protocol Please seethe Microarray Core Facility website of the Dana-Farber Cancer Institutefor details.
Scan protocol confocal laser scanner. Please see theMicroarray Core Facility website of the Dana-Farber Cancer Institute
Description no additional info
Data processing The data were analyzed with MAS 5.0 using Affymetrix default analysis settings. Please see the Microarray Core Facility website of the Dana-Farber Cancer Institutefor more details
 
Submission date May 29, 2007
Last update date Aug 28, 2018
Contact name Jason Allen West
E-mail(s) jasonallenwest@gmail.com
Organization name Children's Hospital, Boston
Street address One Blackfan Circle Room 7004B
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL1261
Series (1)
GSE7948 In vitro modeling of primordial germ cell development
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 230.012 P 0.000445901
AFFX-BioB-M_at 288.211 P 4.42873e-05
AFFX-BioB-3_at 213.381 P 4.42873e-05
AFFX-BioC-5_at 735.454 P 5.16732e-05
AFFX-BioC-3_at 752.465 P 4.42873e-05
AFFX-BioDn-5_at 1182.46 P 4.42873e-05
AFFX-BioDn-3_at 3916.62 P 4.42873e-05
AFFX-CreX-5_at 8047.01 P 5.16732e-05
AFFX-CreX-3_at 8829.27 P 4.42873e-05
AFFX-DapX-5_at 8.08543 A 0.382599
AFFX-DapX-M_at 5.26609 A 0.368438
AFFX-DapX-3_at 1.23653 A 0.960339
AFFX-LysX-5_at 1.41774 A 0.794268
AFFX-LysX-M_at 2.19254 A 0.891021
AFFX-LysX-3_at 1.57102 A 0.645547
AFFX-PheX-5_at 1.51706 A 0.672921
AFFX-PheX-M_at 1.96304 A 0.749204
AFFX-PheX-3_at 5.8511 A 0.48511
AFFX-ThrX-5_at 2.58059 A 0.672921
AFFX-ThrX-M_at 0.575737 A 0.988622

Total number of rows: 45101

Table truncated, full table size 1365 Kbytes.




Supplementary file Size Download File type/resource
GSM195140.CEL.gz 3.6 Mb (ftp)(http) CEL
GSM195140.CHP.gz 246.8 Kb (ftp)(http) CHP
GSM195140.EXP.gz 513 b (ftp)(http) EXP
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

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