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Sample GSM195142 Query DataSets for GSM195142
Status Public on Jun 22, 2009
Title D7 EB Stella+ rep4
Sample type RNA
Source name StellaGFP-positve cells from Day 7 Ebs (in vitro PGCs)
Organism Mus musculus
Characteristics B6CBA,Suspension culture/EB differentiation media
Extracted molecule total RNA
Extraction protocol Trizol/Qiagen RNAeasy according to the manufacturers protocol.
Label Biotin
Label protocol Biotin labeled, performed and described at the Microarray Core Facility website of the Dana-Farber Cancer Institute
Hybridization protocol Please seethe Microarray Core Facility website of the Dana-Farber Cancer Institutefor details.
Scan protocol confocal laser scanner. Please see theMicroarray Core Facility website of the Dana-Farber Cancer Institute
Description no additional info
Data processing The data were analyzed with MAS 5.0 using Affymetrix default analysis settings. Please see the Microarray Core Facility website of the Dana-Farber Cancer Institutefor more details
Submission date May 29, 2007
Last update date Aug 28, 2018
Contact name Jason Allen West
Organization name Children's Hospital, Boston
Street address One Blackfan Circle Room 7004B
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL1261
Series (1)
GSE7948 In vitro modeling of primordial germ cell development
Reanalyzed by GSE119085

Data table header descriptions
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)

Data table
AFFX-BioB-5_at 364.604 P 4.42873e-05
AFFX-BioB-M_at 549.897 P 4.42873e-05
AFFX-BioB-3_at 407.714 P 4.42873e-05
AFFX-BioC-5_at 1089.35 P 4.42873e-05
AFFX-BioC-3_at 849.039 P 4.42873e-05
AFFX-BioDn-5_at 1765.44 P 4.42873e-05
AFFX-BioDn-3_at 3804.09 P 4.42873e-05
AFFX-CreX-5_at 8081.25 P 5.16732e-05
AFFX-CreX-3_at 7896.67 P 4.42873e-05
AFFX-DapX-5_at 0.393341 A 0.712274
AFFX-DapX-M_at 0.303253 A 0.760956
AFFX-DapX-3_at 0.370397 A 0.9273
AFFX-LysX-5_at 3.10768 A 0.313708
AFFX-LysX-M_at 0.535177 A 0.783556
AFFX-LysX-3_at 0.733743 A 0.794268
AFFX-PheX-5_at 1.86389 A 0.659339
AFFX-PheX-M_at 2.25535 A 0.139462
AFFX-PheX-3_at 0.295994 A 0.891102
AFFX-ThrX-5_at 0.676205 A 0.916426
AFFX-ThrX-M_at 0.270769 A 0.686292

Total number of rows: 45101

Table truncated, full table size 1361 Kbytes.

Supplementary file Size Download File type/resource
GSM195142.CEL.gz 2.7 Mb (ftp)(http) CEL
GSM195142.CHP.gz 263.7 Kb (ftp)(http) CHP
GSM195142.EXP.gz 510 b (ftp)(http) EXP
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

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