|
Status |
Public on Aug 14, 2007 |
Title |
G9a-WT |
Sample type |
RNA |
|
|
Source name |
Mouse Embryonic fibroblast
|
Organism |
Mus musculus |
Characteristics |
G9a-deleted MEFs reconstituted with wild type FLAG-G9a (WT)
|
Extracted molecule |
total RNA |
Extraction protocol |
Trizol /RNAeasy cleaning
|
Label |
Biotin
|
Label protocol |
Affymetrix standard one round RT-IVT labeling.
|
|
|
Hybridization protocol |
Standard Affymetrix protocol
|
Scan protocol |
Affymetrix GS3000 scanner - 5um scanning
|
Description |
Transcription profiling involves H3 methyltransferase G9a-deleted MEFs reconstituted with empty vector (delta), wild type FLAG-G9a (WT), FLAG-G9a K165A (K165A) or FLAG-G9a H1093K catalytic mutant (H1093K).
|
Data processing |
OVerall intensity of the image was targeted to 500
Probe set intensity was extracted by GCOS 1.4
|
|
|
Submission date |
Jun 04, 2007 |
Last update date |
Mar 18, 2009 |
Contact name |
Agnes Viale |
E-mail(s) |
vialea@mskcc.org
|
Phone |
212 639 3031
|
Fax |
212 717 3053
|
Organization name |
Memorial Sloan Kettering Cancer Center
|
Department |
Molecular Biology
|
Lab |
Genomics Core Laboratory
|
Street address |
1275 York Avenue
|
City |
New York |
State/province |
NY |
ZIP/Postal code |
10021 |
Country |
USA |
|
|
Platform ID |
GPL8321 |
Series (1) |
GSE8011 |
Methylation of hMTase G9a on a histone-like site regulates protein complex assembly |
|