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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Dec 01, 2007 |
| Title |
F9_3, mouse, FVB, control (non-infected), 9 day time matched control_rep 3 |
| Sample type |
RNA |
| |
|
| Source name |
mouse colon
|
| Organism |
Mus musculus |
| Characteristics |
mouse, FVB, control (non-infected), 9 day time matched control, replicate 3
mouse colon
|
| Treatment protocol |
mouse colon control
|
| Growth protocol |
mouse colon
|
| Extracted molecule |
total RNA |
| Extraction protocol |
rna easy extraction
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were prepared according to the standard Affymetrix protocol
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| |
|
| Hybridization protocol |
Following fragmentation, cRNA was hybridized on Mouse genome 430 2.0 according to the standard Affymetrix protocol
|
| Scan protocol |
GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
|
| Description |
Gene expression data from mouse colon
|
| Data processing |
The data were analyzed with D-chip
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| |
|
| Submission date |
Jun 05, 2007 |
| Last update date |
Aug 28, 2018 |
| Contact name |
Rebecca Catherine Fry |
| E-mail(s) |
rfry@unc.edu
|
| Organization name |
UNC-Chapel Hill
|
| Department |
Environmental Sciences and Engineering
|
| Street address |
1213 MHRC
|
| City |
Chapel Hill |
| ZIP/Postal code |
27599 |
| Country |
USA |
| |
|
| Platform ID |
GPL1261 |
| Series (1) |
| GSE8025 |
Diarrhea as a Cause of Mortality in a Mouse Model of Infectious Colitis |
|
| Relations |
| Reanalyzed by |
GSE119085 |
| Data table header descriptions |
| ID_REF |
|
| VALUE |
dCHIP calculated Signal intensity log2 |
| Data table |
| ID_REF |
VALUE |
| AFFX-BioB-5_at |
8.36091 |
| AFFX-BioB-M_at |
8.68439 |
| AFFX-BioB-3_at |
8.51337 |
| AFFX-BioC-5_at |
9.50921 |
| AFFX-BioC-3_at |
9.82259 |
| AFFX-BioDn-5_at |
10.7055 |
| AFFX-BioDn-3_at |
11.7045 |
| AFFX-CreX-5_at |
12.8778 |
| AFFX-CreX-3_at |
13.2197 |
| AFFX-DapX-5_at |
10.653 |
| AFFX-DapX-M_at |
11.1762 |
| AFFX-DapX-3_at |
11.2339 |
| AFFX-LysX-5_at |
6.7282 |
| AFFX-LysX-M_at |
7.62023 |
| AFFX-LysX-3_at |
8.64548 |
| AFFX-PheX-5_at |
7.79977 |
| AFFX-PheX-M_at |
7.99253 |
| AFFX-PheX-3_at |
8.15688 |
| AFFX-ThrX-5_at |
8.67901 |
| AFFX-ThrX-M_at |
8.69298 |
Total number of rows: 45101
Table truncated, full table size 850 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM198105.CEL.gz |
5.9 Mb |
(ftp)(http) |
CEL |
| Processed data included within Sample table |
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