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Sample GSM198109 Query DataSets for GSM198109
Status Public on Dec 01, 2007
Title Fi9_1, mouse, FVB, infected, 9 days post infection_rep 1
Sample type RNA
 
Source name mouse colon
Organism Mus musculus
Characteristics mouse, FVB 9 days post infection, replicate 1
mouse colon
Treatment protocol mouse colon control
Growth protocol mouse colon
Extracted molecule total RNA
Extraction protocol rna easy extraction
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Following fragmentation, cRNA was hybridized on Mouse genome 430 2.0 according to the standard Affymetrix protocol
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
Description Gene expression data from mouse colon
Data processing The data were analyzed with D-chip
 
Submission date Jun 05, 2007
Last update date Aug 28, 2018
Contact name Rebecca Catherine Fry
E-mail(s) rfry@unc.edu
Organization name UNC-Chapel Hill
Department Environmental Sciences and Engineering
Street address 1213 MHRC
City Chapel Hill
ZIP/Postal code 27599
Country USA
 
Platform ID GPL1261
Series (1)
GSE8025 Diarrhea as a Cause of Mortality in a Mouse Model of Infectious Colitis
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE dCHIP calculated Signal intensity log2

Data table
ID_REF VALUE
AFFX-BioB-5_at 8.49281
AFFX-BioB-M_at 8.7902
AFFX-BioB-3_at 8.69515
AFFX-BioC-5_at 9.59786
AFFX-BioC-3_at 10.0174
AFFX-BioDn-5_at 10.9068
AFFX-BioDn-3_at 11.6636
AFFX-CreX-5_at 12.97
AFFX-CreX-3_at 13.3338
AFFX-DapX-5_at 11.2125
AFFX-DapX-M_at 11.6447
AFFX-DapX-3_at 11.6911
AFFX-LysX-5_at 7.59555
AFFX-LysX-M_at 8.19914
AFFX-LysX-3_at 9.24144
AFFX-PheX-5_at 8.66199
AFFX-PheX-M_at 8.75846
AFFX-PheX-3_at 8.72738
AFFX-ThrX-5_at 9.42867
AFFX-ThrX-M_at 9.41329

Total number of rows: 45101

Table truncated, full table size 849 Kbytes.




Supplementary file Size Download File type/resource
GSM198109.CEL.gz 5.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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