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Sample GSM198111 Query DataSets for GSM198111
Status Public on Dec 01, 2007
Title Fi9_3, mouse, FVB, infected, 9 days post infection_rep 3
Sample type RNA
 
Source name mouse colon
Organism Mus musculus
Characteristics mouse, FVB 9 days post infection, replicate 3
mouse colon
Treatment protocol mouse colon control
Growth protocol mouse colon
Extracted molecule total RNA
Extraction protocol rna easy extraction
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Following fragmentation, cRNA was hybridized on Mouse genome 430 2.0 according to the standard Affymetrix protocol
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
Description Gene expression data from mouse colon
Data processing The data were analyzed with D-chip
 
Submission date Jun 05, 2007
Last update date Aug 28, 2018
Contact name Rebecca Catherine Fry
E-mail(s) rfry@unc.edu
Organization name UNC-Chapel Hill
Department Environmental Sciences and Engineering
Street address 1213 MHRC
City Chapel Hill
ZIP/Postal code 27599
Country USA
 
Platform ID GPL1261
Series (1)
GSE8025 Diarrhea as a Cause of Mortality in a Mouse Model of Infectious Colitis
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE dCHIP calculated Signal intensity log2

Data table
ID_REF VALUE
AFFX-BioB-5_at 8.27407
AFFX-BioB-M_at 8.5131
AFFX-BioB-3_at 8.46412
AFFX-BioC-5_at 9.375
AFFX-BioC-3_at 9.85139
AFFX-BioDn-5_at 10.6754
AFFX-BioDn-3_at 11.5093
AFFX-CreX-5_at 12.7265
AFFX-CreX-3_at 13.1207
AFFX-DapX-5_at 10.1336
AFFX-DapX-M_at 10.5987
AFFX-DapX-3_at 10.6846
AFFX-LysX-5_at 6.46432
AFFX-LysX-M_at 7.37387
AFFX-LysX-3_at 8.13721
AFFX-PheX-5_at 7.4106
AFFX-PheX-M_at 7.60727
AFFX-PheX-3_at 7.83854
AFFX-ThrX-5_at 8.27372
AFFX-ThrX-M_at 8.27915

Total number of rows: 45101

Table truncated, full table size 849 Kbytes.




Supplementary file Size Download File type/resource
GSM198111.CEL.gz 5.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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