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Sample GSM198120 Query DataSets for GSM198120
Status Public on Dec 01, 2007
Title Si9_2, mouse, SW, infected, 9 days post infection_rep 2
Sample type RNA
 
Source name mouse colon
Organism Mus musculus
Characteristics mouse, SW 9 days post infection, replicate 2
mouse colon
Treatment protocol mouse colon control
Growth protocol mouse colon
Extracted molecule total RNA
Extraction protocol rna easy extraction
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Following fragmentation, cRNA was hybridized on Mouse genome 430 2.0 according to the standard Affymetrix protocol
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
Description Gene expression data from mouse colon
Data processing The data were analyzed with D-chip
 
Submission date Jun 05, 2007
Last update date Aug 28, 2018
Contact name Rebecca Catherine Fry
E-mail(s) rfry@unc.edu
Organization name UNC-Chapel Hill
Department Environmental Sciences and Engineering
Street address 1213 MHRC
City Chapel Hill
ZIP/Postal code 27599
Country USA
 
Platform ID GPL1261
Series (1)
GSE8025 Diarrhea as a Cause of Mortality in a Mouse Model of Infectious Colitis
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE dCHIP calculated Signal intensity log2

Data table
ID_REF VALUE
AFFX-BioB-5_at 8.48036
AFFX-BioB-M_at 8.79661
AFFX-BioB-3_at 8.75667
AFFX-BioC-5_at 9.61927
AFFX-BioC-3_at 9.95378
AFFX-BioDn-5_at 10.7822
AFFX-BioDn-3_at 11.7105
AFFX-CreX-5_at 12.9656
AFFX-CreX-3_at 13.3644
AFFX-DapX-5_at 11.1573
AFFX-DapX-M_at 11.5628
AFFX-DapX-3_at 11.5943
AFFX-LysX-5_at 7.3513
AFFX-LysX-M_at 8.23837
AFFX-LysX-3_at 9.16535
AFFX-PheX-5_at 8.52936
AFFX-PheX-M_at 8.63035
AFFX-PheX-3_at 8.68047
AFFX-ThrX-5_at 9.40521
AFFX-ThrX-M_at 9.265

Total number of rows: 45101

Table truncated, full table size 849 Kbytes.




Supplementary file Size Download File type/resource
GSM198120.CEL.gz 5.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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