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Sample GSM198362 Query DataSets for GSM198362
Status Public on May 29, 2008
Title E18 cortex GFP+ Prominin+ cells, sample S4
Sample type RNA
 
Source name FACS-sorted cells from cortex of E18 embryos of hGFAP eGFP mice
Organism Mus musculus
Characteristics Selected by FACS for positive staining for prominin and GFP
Extracted molecule total RNA
Extraction protocol RNeasy Mini kit (Qiagen) with on column DNase treatment
Label biotin
Label protocol MessageAmp II-Biotin Enhanced (Ambion, 1791)
 
Hybridization protocol Affymetrix Expression protocol
Scan protocol Affymetrix Expression protocol
Description Prospective isolation of radial glia subtypes – lineage and transcriptom analysis
Luisa Pinto1, Michael Mader1, Martin Irmler2, Marco Gentilini3, Federico Santoni4, Vassiliki Nikoletopoulou5, Steven Pollard6, Alessandro Bulfone3, Yves Barde5, Johannes Beckers2, and Magdalena Götz1,7,8
Data processing Mas 5.0
 
Submission date Jun 06, 2007
Last update date Aug 28, 2018
Contact name Johannes Beckers
E-mail(s) beckers@helmholtz-muenchen.de
Organization name Helmholtz Zentrum Muenchen
Department Institute of Experimental Genetics
Street address Ingolstaedter Landstr. 1
City Neuherberg
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL1261
Series (1)
GSE8034 Prospective isolation of functionally distinct radial glial subtypes - lineage and transcriptome analysis
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE Mas 5.0
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 324.464 P 5.16732e-05
AFFX-BioB-M_at 502.985 P 4.42873e-05
AFFX-BioB-3_at 309.195 P 5.16732e-05
AFFX-BioC-5_at 900.286 P 4.42873e-05
AFFX-BioC-3_at 1202.46 P 4.42873e-05
AFFX-BioDn-5_at 1954.35 P 4.42873e-05
AFFX-BioDn-3_at 3750.82 P 4.42873e-05
AFFX-CreX-5_at 10635.9 P 5.16732e-05
AFFX-CreX-3_at 12266.2 P 4.42873e-05
AFFX-DapX-5_at 395.192 P 4.42873e-05
AFFX-DapX-M_at 1065.41 P 9.4506e-05
AFFX-DapX-3_at 1930.6 P 4.42873e-05
AFFX-LysX-5_at 85.3783 P 7.00668e-05
AFFX-LysX-M_at 143.254 P 5.16732e-05
AFFX-LysX-3_at 412.215 P 5.16732e-05
AFFX-PheX-5_at 132.945 P 8.14279e-05
AFFX-PheX-M_at 180.194 P 4.42873e-05
AFFX-PheX-3_at 234.414 P 4.42873e-05
AFFX-ThrX-5_at 94.6654 P 0.000389797
AFFX-ThrX-M_at 228.527 P 4.42873e-05

Total number of rows: 45101

Table truncated, full table size 1380 Kbytes.




Supplementary file Size Download File type/resource
GSM198362.CEL.gz 3.1 Mb (ftp)(http) CEL
GSM198362.CHP.gz 250.1 Kb (ftp)(http) CHP
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

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