NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM198683 Query DataSets for GSM198683
Status Public on Jun 09, 2008
Title Fibrosarcoma induced spontaneously in C3H/He mouse, no irradiation (g_nfsa_0_0h_1)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Fibrosarcoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description no irradiation
Data processing global median normalization
 
Submission date Jun 06, 2007
Last update date Jun 02, 2008
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE11629 Gene expression profiles of four murine tumors after carbon-ion (C-ion) or gamma irradiation.

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 7065.0508 47.9093 G 74.4249 7142.0508 3629.0000 7354.1909 120 12.3607740402222 95.9631943348143 77.3771 77.0000 12.6421 181 47.9093
1002 1 1977.2615 13.4081 G 21.8507 2052.2615 2484.0000 1222.5961 88 10.5851345062256 93.9218193445194 76.5495 75.0000 12.6145 188 13.4081
1003 1 37.3077 0.2530 G 1.1819 116.3077 114.0000 18.8297 52 8.1368579864502 98.4041020584625 78.0989 79.0000 12.9361 188 0.2530
1004 1 101.5479 0.6886 G 1.8506 179.5479 174.0000 40.3081 73 9.64087581634521 97.0201818906202 79.0165 78.0000 12.6801 188 0.6886
1005 1 20.3778 0.1382 G 1.0249 98.3778 99.0000 17.9892 45 7.56939744949341 95.9865934398765 77.6213 78.0000 11.9911 175 0.1382
1006 1 1.8276 0.0124 L 0.8203 79.8276 80.0000 11.2803 29 6.07650756835938 97.3163548142902 76.8973 78.0000 12.8776 152 0.0124
1007 1 6977.3740 47.3148 G 72.2003 7056.3740 4505.0000 7307.7427 125 12.6156625747681 97.7333239216707 78.5549 79.0000 12.4889 188 47.3148
1008 1 6568.6016 44.5428 G 66.9373 6648.6016 4016.0000 7149.2871 125 12.6156625747681 99.3258644882529 80.1707 80.0000 12.8839 170 44.5428
1010 1 552.2683 3.7450 G 6.6300 628.2683 765.0000 295.9502 82 10.2179079055786 94.7617872354749 76.5461 76.0000 12.5079 145 3.7450
1012 1 874.7161 5.9316 G 9.7315 952.7161 1132.0000 525.9380 81 10.1554126739502 97.9006338092006 78.7637 78.0000 13.2671 188 5.9316
1013 1 61.1500 0.4147 G 1.4518 139.1500 140.0000 23.5944 60 8.74038791656494 95.8450129709279 77.7857 78.0000 11.8967 188 0.4147
1014 1 7408.9741 50.2415 G 72.2645 7489.9741 5256.0000 7340.0269 118 12.2573356628418 103.646623006093 81.4835 81.0000 15.0977 188 50.2415
1015 1 7478.7109 50.7144 G 77.2371 7557.7109 3691.0000 7626.6895 123 12.5143299102783 97.8507489165195 78.5934 79.0000 12.5672 188 50.7144
1017 1 112.7042 0.7643 G 1.9976 190.7042 199.0000 50.0218 71 9.50789165496826 95.4669358311974 77.7198 78.0000 11.6446 188 0.7643
1018 1 35.3333 0.2396 G 1.1958 111.3333 109.0000 20.2630 60 8.74038791656494 93.1034240340636 77.1955 76.0000 11.4023 185 0.2396
1019 1 116.4688 0.7898 G 1.7122 195.4688 197.0000 41.0681 64 9.02703380584717 114.161608670461 85.2088 79.0000 23.4411 188 0.7898
1020 1 39.0755 0.2650 G 1.2137 117.0755 114.0000 16.2908 53 8.21472454071045 96.4608685326371 78.5385 78.0000 12.3072 188 0.2650
1021 1 7670.7588 52.0167 G 75.7970 7752.7588 4973.0000 7688.0664 118 12.2573356628418 102.283202093476 81.6319 82.0000 13.5221 188 52.0167
1022 1 6550.4565 44.4198 G 70.8031 6627.4565 3243.0000 7165.8848 129 12.8159236907959 93.6040540917683 77.4069 77.0000 11.0694 151 44.4198
1024 1 -0.1000 -0.0007 L 0.7961 77.9000 77.0000 13.4520 30 6.18038702011108 97.8521232892661 79.2582 78.0000 13.2347 188 -0.0007

Total number of rows: 36227

Table truncated, full table size 4692 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap