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Sample GSM198686 Query DataSets for GSM198686
Status Public on Jun 09, 2008
Title Fibrosarcoma induced spontaneously in C3H/He mouse, 6 hours after gamma irradiation at 30 Gy (g_nfsa_30_6h_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Fibrosarcoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 6 hours after gamma irradiation at 30 Gy
Data processing global median normalization
 
Submission date Jun 06, 2007
Last update date Jun 02, 2008
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE11629 Gene expression profiles of four murine tumors after carbon-ion (C-ion) or gamma irradiation.

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 7346.5967 46.7958 G 72.4030 7429.5967 4742.0000 7461.8750 116 12.1530151367188 102.614497674132 82.2747 83.0000 13.0763 188 46.7958
1002 1 1908.1505 12.1544 G 20.6471 1986.1505 2241.0000 1281.2875 93 10.8816947937012 96.195254453736 79.4056 78.0000 12.1302 186 12.1544
1003 1 32.5778 0.2075 G 1.1275 115.5778 112.0000 21.5360 45 7.56939744949341 102.503771721362 83.4066 83.0000 13.0025 188 0.2075
1004 1 81.0597 0.5163 G 1.6403 163.0597 163.0000 34.0885 67 9.23618125915527 99.4067594132879 81.7126 82.0000 11.6045 180 0.5163
1005 1 17.5128 0.1116 L 0.9874 97.5128 98.0000 16.2273 39 7.04672574996948 98.7577243813251 81.0165 80.0000 12.5052 188 0.1116
1006 1 9.2308 0.0588 L 0.9089 91.2308 90.0000 14.4352 91 10.7640514373779 100.372095371829 82.3268 82.0000 12.2481 213 0.0588
1007 1 8020.6787 51.0896 G 75.6954 8107.6787 5372.0000 7576.9399 111 11.8882122039795 107.109292353157 86.7368 87.0000 13.4062 177 51.0896
1008 1 7566.1943 48.1946 G 72.3638 7651.1943 4618.0000 7626.5474 110 11.8345403671265 105.732278994956 84.2747 85.0000 13.8215 188 48.1946
1010 1 466.6835 2.9726 G 5.4772 547.6835 638.0000 242.9041 79 10.0292530059814 99.9935416347089 81.8352 81.0000 12.6624 188 2.9726
1012 1 748.2651 4.7662 G 8.2672 830.2651 983.0000 435.0026 83 10.2800235748291 100.429061298921 82.3978 82.0000 12.2860 187 4.7662
1013 1 62.1786 0.3961 G 1.3970 143.1786 137.0000 36.6378 56 8.444016456604 102.493218043472 82.3901 81.0000 14.3288 188 0.3961
1014 1 7170.0991 45.6716 G 71.0160 7253.0991 3821.0000 7522.8286 113 11.9948348999023 102.133366221883 82.2747 83.0000 12.7556 188 45.6716
1015 1 7267.0337 46.2891 G 75.6560 7346.0337 4026.0000 7838.8999 120 12.3607740402222 97.0978259817288 79.9560 79.0000 12.0652 188 46.2891
1017 1 109.1618 0.6953 G 1.9554 187.1618 190.0000 46.2829 68 9.30485343933105 95.7174906542905 78.8901 78.0000 11.8117 188 0.6953
1018 1 32.4694 0.2068 G 1.1402 112.4694 114.0000 15.9234 49 7.89865398406982 98.6373928392091 79.9835 80.0000 12.4249 188 0.2068
1019 1 70.1500 0.4468 G 1.4976 153.1500 152.0000 28.5376 60 8.74038791656494 102.264100767987 83.0604 83.0000 12.8427 188 0.4468
1020 1 33.1765 0.2113 G 1.1602 113.1765 112.0000 15.0811 51 8.0582389831543 97.5453733675748 80.2363 80.0000 11.6969 188 0.2113
1021 1 7603.7373 48.4338 G 74.8141 7687.7373 4256.0000 7963.5913 120 12.3607740402222 102.757895013793 83.4835 84.0000 12.5053 188 48.4338
1022 1 7353.3872 46.8391 G 71.0049 7437.3872 4473.0000 7627.7549 113 11.9948348999023 104.744740242862 84.0714 84.0000 13.8298 188 46.8391
1024 1 4.5893 0.0292 L 0.8745 84.5893 84.0000 15.5951 56 8.444016456604 96.724567073935 79.7250 80.0000 11.1497 124 0.0292

Total number of rows: 36227

Table truncated, full table size 4697 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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