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Sample GSM198687 Query DataSets for GSM198687
Status Public on Jun 09, 2008
Title Fibrosarcoma induced spontaneously in C3H/He mouse, 1 day after gamma irradiation at 30 Gy (g_nfsa_30_1d_3)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Fibrosarcoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 1 day after gamma irradiation at 30 Gy
Data processing global median normalization
 
Submission date Jun 06, 2007
Last update date Jun 02, 2008
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE11629 Gene expression profiles of four murine tumors after carbon-ion (C-ion) or gamma irradiation.

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 7528.5869 54.8934 G 74.6767 7611.5869 4606.0000 7726.4619 111 11.8882122039795 101.927266582468 81.7747 83.0000 12.6182 188 54.8934
1002 1 2398.3667 17.4873 G 24.7227 2481.3667 3105.0000 1625.7061 90 10.7047443389893 100.368119132901 83.4176 83.0000 11.5787 188 17.4873
1003 1 33.4364 0.2438 G 1.1491 114.4364 113.0000 15.0270 55 8.36828422546387 99.5878550266792 83.1934 81.0000 12.3919 187 0.2438
1004 1 94.2754 0.6874 G 1.7354 175.2754 178.0000 41.6729 69 9.37302112579346 100.997391461979 81.2778 81.0000 13.3316 168 0.6874
1005 1 24.7473 0.1804 G 1.0721 104.7473 95.0000 44.7868 91 10.7640514373779 97.7058271540966 81.5744 80.0000 11.8039 203 0.1804
1006 1 22.0789 0.1610 G 1.0386 101.0789 102.0000 25.9102 38 6.95579624176025 97.3202443864875 79.3791 79.0000 12.2135 188 0.1610
1007 1 7826.8691 57.0683 G 78.8558 7907.8691 4914.0000 7740.3462 109 11.7806243896484 100.282622200855 80.3626 81.0000 12.8551 188 57.0683
1008 1 6946.1162 50.6464 G 71.1012 7027.1162 3436.0000 7573.8052 114 12.0477924346924 98.8326652981908 81.4630 81.0000 11.8884 168 50.6464
1010 1 635.1085 4.6308 G 7.2703 716.1085 852.0000 349.5053 83 10.2800235748291 98.4977363314797 80.8901 81.0000 11.6652 188 4.6308
1012 1 1038.8987 7.5749 G 10.9300 1120.8987 1338.0000 595.6117 79 10.0292530059814 102.552331904685 81.2418 82.0000 13.7016 188 7.5749
1013 1 51.5714 0.3760 G 1.3469 132.5714 127.0000 21.7932 63 8.95623207092285 98.4300895623843 80.4341 81.0000 11.6201 188 0.3760
1014 1 7607.2705 55.4671 G 76.1697 7689.2705 4408.0000 7638.2886 113 11.9948348999023 100.949242621306 82.3846 82.0000 12.6328 188 55.4671
1015 1 7237.3750 52.7701 G 75.2170 7317.3750 4251.0000 7848.5352 122 12.4633550643921 97.2835423555365 80.3462 80.0000 11.5224 188 52.7701
1017 1 27.6346 0.2015 G 1.1033 107.6346 108.0000 17.4456 52 8.1368579864502 97.5589822582721 80.5000 80.0000 11.7060 188 0.2015
1018 1 35.4667 0.2586 G 1.1826 116.4667 115.0000 17.4618 60 8.74038791656494 98.4853528985539 81.3077 81.0000 11.6569 188 0.2586
1019 1 99.5882 0.7261 G 1.8108 180.5882 179.0000 46.4015 68 9.30485343933105 99.7304351753211 82.5611 81.0000 12.4870 186 0.7261
1020 1 33.9184 0.2473 G 1.1727 114.9184 115.0000 18.4688 49 7.89865398406982 97.9935141649686 81.4505 81.0000 11.3290 188 0.2473
1021 1 7076.8955 51.6000 G 70.4448 7159.8955 3850.0000 7477.5474 117 12.2052869796753 101.63833626925 82.9670 83.0000 12.4256 188 51.6000
1022 1 6919.6230 50.4532 G 71.7399 6999.6230 4350.0000 7392.7368 116 12.1530151367188 97.5695100981199 81.3642 80.0000 11.7130 168 50.4532
1024 1 15.6487 0.1141 L 0.9783 96.6487 96.0000 16.3678 37 6.86366271972656 98.7960312090348 81.5287 81.0000 11.8640 180 0.1141

Total number of rows: 36227

Table truncated, full table size 4692 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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