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Sample GSM198691 Query DataSets for GSM198691
Status Public on Jun 09, 2008
Title Fibrosarcoma induced spontaneously in C3H/He mouse, 6 hours after gamma irradiation at 50 Gy (g_nfsa_50_6h_1)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Fibrosarcoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 6 hours after gamma irradiation at 50 Gy
Data processing global median normalization
 
Submission date Jun 06, 2007
Last update date Jun 02, 2008
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE11629 Gene expression profiles of four murine tumors after carbon-ion (C-ion) or gamma irradiation.

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 6854.2788 50.2257 G 69.6590 6935.2788 3173.0000 7493.8418 124 12.5650987625122 99.5604069725733 81.3901 81.0000 12.3736 188 50.2257
1002 1 1838.3187 13.4706 G 19.7211 1919.3187 2375.0000 1250.5177 91 10.7640514373779 97.3230889039723 80.8571 81.0000 10.8821 188 13.4706
1003 1 36.2000 0.2653 G 1.1875 117.2000 116.0000 19.2792 55 8.36828422546387 98.6986578558381 80.7944 81.0000 11.7991 186 0.2653
1004 1 93.6094 0.6859 G 1.7991 171.6094 172.0000 41.5341 64 9.02703380584717 95.38387516086 79.3352 78.0000 11.5893 188 0.6859
1005 1 5.6970 0.0417 L 0.8504 87.6970 87.0000 18.1333 33 6.48204469680786 103.121595314854 82.7692 82.0000 14.0811 188 0.0417
1006 1 22.3243 0.1636 G 1.0565 103.3243 102.0000 15.0514 37 6.86366271972656 97.7983939687171 80.1703 81.0000 11.1989 188 0.1636
1007 1 7120.1582 52.1740 G 71.5687 7201.1582 3578.0000 7536.1943 122 12.4633550643921 100.618817048237 82.0110 81.0000 13.0792 188 52.1740
1008 1 7213.5894 52.8586 G 71.2371 7295.5894 4925.0000 7445.5371 114 12.0477924346924 102.412758612306 82.5604 82.0000 13.6085 188 52.8586
1010 1 438.5641 3.2136 G 5.2109 518.5641 619.0000 252.1751 78 9.96557521820068 99.5148479218016 81.1552 80.0000 13.0099 180 3.2136
1012 1 763.1875 5.5924 G 8.3921 843.1875 988.0000 425.0812 80 10.0925302505493 100.474490289905 81.8956 80.0000 13.6497 188 5.5924
1013 1 59.6000 0.4367 G 1.4059 140.6000 144.0000 24.8432 55 8.36828422546387 100.004378207758 81.6319 81.0000 12.6696 188 0.4367
1014 1 6719.5811 49.2387 G 66.4435 6802.5811 2795.0000 7347.7388 119 12.3091630935669 102.381395737641 83.1484 83.0000 12.9209 188 49.2387
1015 1 6953.7817 50.9549 G 70.7515 7034.7817 3415.0000 7783.7129 121 12.4121704101563 99.4294317564348 79.5220 81.0000 12.2863 188 50.9549
1017 1 42.0980 0.3085 G 1.2432 122.0980 115.0000 25.2713 51 8.0582389831543 98.2144916329515 81.3681 80.0000 12.1430 188 0.3085
1018 1 64.8136 0.4749 G 1.3421 147.8136 128.0000 63.8078 59 8.66724491119385 110.13784769879 84.8462 83.0000 18.0919 188 0.4749
1019 1 78.1429 0.5726 L 0.9950 169.1429 173.0000 23.6862 35 6.67558097839355 170.000973249769 107.3702 91.0000 52.6673 187 0.5726
1020 1 107.0882 C 1.0234 215.0882 132.0000 244.4555 34 6.57952451705933 210.174650268232 126.0127 108.0000 68.1164 164 0.7847
1021 1 9203.2949 67.4385 G 55.1564 9295.2949 8336.0000 7635.7612 95 10.9980792999268 168.526197195723 107.2747 92.0000 51.0175 188 67.4385
1022 1 7804.4370 57.1882 G 63.9993 7895.4370 5318.0000 7284.7344 105 11.562445640564 123.367519544721 93.9176 91.0000 21.5783 188 57.1882
1024 1 22.6500 0.1660 G 1.0687 101.6500 101.0000 18.4534 40 7.13649654388428 95.1142507179843 79.0604 79.0000 10.7428 188 0.1660

Total number of rows: 36227

Table truncated, full table size 4689 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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