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Sample GSM198692 Query DataSets for GSM198692
Status Public on Jun 09, 2008
Title Fibrosarcoma induced spontaneously in C3H/He mouse, 6 hours after gamma irradiation at 50 Gy (g_nfsa_50_6h_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Fibrosarcoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 6 hours after gamma irradiation at 50 Gy
Data processing global median normalization
 
Submission date Jun 06, 2007
Last update date Jun 02, 2008
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE11629 Gene expression profiles of four murine tumors after carbon-ion (C-ion) or gamma irradiation.

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 6895.8760 46.1358 G 74.0686 6972.8760 2737.0000 7640.0635 123 12.5143299102783 94.1407200376254 78.3956 77.0000 11.4271 188 46.1358
1002 1 2191.8696 14.6644 G 23.5968 2268.8696 2718.0000 1438.5446 92 10.8230323791504 96.1517371500414 78.6868 77.0000 12.7678 188 14.6644
1003 1 42.3269 0.2832 G 1.2563 118.3269 120.0000 19.3627 52 8.1368579864502 94.187032681614 76.2033 76.0000 12.1247 188 0.2832
1004 1 111.9104 0.7487 G 2.0035 189.9104 191.0000 40.7738 67 9.23618125915527 94.7912488208247 78.7692 78.0000 11.1942 188 0.7487
1005 1 16.7556 0.1121 L 0.9849 94.7556 96.0000 17.9953 45 7.56939744949341 96.2120553269381 77.2857 78.0000 12.1414 188 0.1121
1006 1 9.2316 0.0618 L 0.9195 88.2316 88.0000 15.8197 95 10.9980792999268 95.956044896332 79.7588 79.0000 11.3040 207 0.0618
1007 1 6373.9673 42.6440 G 66.8261 6453.9673 2782.0000 7354.9541 125 12.6156625747681 96.578492950422 79.3148 80.0000 11.0523 168 42.6440
1008 1 7345.7393 49.1455 G 75.8907 7424.7393 4747.0000 7664.4863 117 12.2052869796753 97.8346867708018 79.5549 79.0000 12.5565 188 49.1455
1010 1 499.9874 3.3451 G 5.9161 578.9874 703.0000 285.3873 79 10.0292530059814 97.8669917549812 78.2033 79.0000 12.5780 188 3.3451
1012 1 969.2976 6.4849 G 10.7951 1048.2976 1300.0000 589.2990 84 10.3417663574219 97.1090016628028 78.8242 79.0000 12.0727 188 6.4849
1013 1 65.8889 0.4408 G 1.5147 142.8889 142.0000 25.8126 63 8.95623207092285 94.3341788190981 78.9945 77.0000 11.5561 188 0.4408
1014 1 7212.0088 48.2508 G 72.1375 7294.0088 4519.0000 7446.1602 117 12.2052869796753 101.112531491894 82.1099 82.0000 12.7417 188 48.2508
1015 1 7030.6196 47.0373 G 72.0428 7108.6196 3620.0000 7783.9639 123 12.5143299102783 98.6721300190897 80.5604 78.0000 13.7814 188 47.0373
1017 1 51.9836 0.3478 G 1.3509 129.9836 132.0000 23.3642 61 8.81292343139648 96.2172895614918 77.6648 78.0000 12.1449 188 0.3478
1018 1 49.6226 0.3320 G 1.3270 126.6226 122.0000 22.4518 53 8.21472454071045 95.4200378109194 77.5220 77.0000 12.2800 188 0.3320
1019 1 95.3607 0.6380 G 1.8204 172.3607 173.0000 34.9965 61 8.81292343139648 94.6817011045978 77.4670 77.0000 11.7878 188 0.6380
1020 1 35.5088 0.2376 G 1.1705 113.5088 114.0000 17.6398 57 8.51907634735107 96.9753610144795 77.9341 78.0000 12.6502 188 0.2376
1021 1 7018.1953 46.9541 G 70.2370 7099.1953 3677.0000 7695.5942 125 12.6156625747681 101.074811084683 78.7912 81.0000 13.3832 188 46.9541
1022 1 7322.4287 48.9896 G 72.3665 7404.4287 5241.0000 7546.2192 114 12.0477924346924 102.318435495039 82.9286 82.0000 13.5456 188 48.9896
1024 1 17.8333 0.1193 G 1.0117 94.8333 98.0000 15.4595 42 7.3127326965332 93.7405575368961 76.7680 77.0000 11.1604 187 0.1193

Total number of rows: 36227

Table truncated, full table size 4694 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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