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Sample GSM198694 Query DataSets for GSM198694
Status Public on Jun 09, 2008
Title Fibrosarcoma induced spontaneously in C3H/He mouse, 1 day after gamma irradiation at 50 Gy (g_nfsa_50_1d_4)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Fibrosarcoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 1 day after gamma irradiation at 50 Gy
Data processing global median normalization
 
Submission date Jun 06, 2007
Last update date Jun 02, 2008
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE11629 Gene expression profiles of four murine tumors after carbon-ion (C-ion) or gamma irradiation.

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 7512.6577 51.9857 G 77.4036 7591.6577 3854.0000 7660.5449 116 12.1530151367188 98.0788485711867 79.9176 79.0000 12.7192 188 51.9857
1002 1 2611.3735 18.0701 G 27.2988 2690.3735 3035.0000 1699.3613 91 10.7640514373779 98.5527253692346 78.5714 79.0000 13.0352 188 18.0701
1003 1 31.4035 0.2173 G 1.1312 110.4035 109.0000 14.1469 57 8.51907634735107 97.602438575595 78.9278 79.0000 12.4016 186 0.2173
1004 1 88.1015 0.6096 G 1.7415 166.1015 166.0000 39.2333 69 9.37302112579346 95.3795319669906 77.6319 78.0000 11.5864 188 0.6096
1005 1 13.2500 0.0917 L 0.9420 93.2500 96.0000 14.7627 40 7.13649654388428 98.9964777075029 80.4746 80.0000 12.6643 183 0.0917
1006 1 19.6667 0.1361 G 1.0224 97.6667 98.0000 15.6046 39 7.04672574996948 95.5261364147799 79.0829 78.0000 11.6841 187 0.1361
1007 1 6901.3999 47.7560 G 73.4301 6980.3999 3816.0000 7186.7222 117 12.2052869796753 95.0618534035809 79.0110 79.0000 10.7079 188 47.7560
1008 1 6858.3335 47.4580 G 73.4096 6934.3335 3620.0000 7450.0146 122 12.4633550643921 94.4608154669736 77.6154 76.0000 12.3072 188 47.4580
1010 1 641.5488 4.4394 G 7.5720 720.5488 865.0000 337.4270 82 10.2179079055786 95.1590188704625 78.7778 79.0000 10.7727 186 4.4394
1012 1 935.4815 6.4733 G 10.3778 1015.4815 1170.0000 532.8491 81 10.1554126739502 97.8508869862702 78.7088 80.0000 11.9006 188 6.4733
1013 1 57.6441 0.3989 G 1.3935 136.6441 137.0000 19.6087 59 8.66724491119385 98.0580308400423 80.6813 79.0000 12.7053 188 0.3989
1014 1 7022.4956 48.5939 G 72.7397 7102.4956 3627.0000 7495.8452 119 12.3091630935669 97.6426601888897 80.7747 80.0000 11.7618 188 48.5939
1015 1 7594.1104 52.5493 G 76.8996 7674.1104 4788.0000 7730.3750 120 12.3607740402222 99.7938458372824 80.6704 80.0000 13.1959 185 52.5493
1017 1 34.2500 0.2370 G 1.1626 112.2500 111.0000 16.1600 48 7.81764030456543 96.5500092846284 78.5879 78.0000 12.3667 188 0.2370
1018 1 40.3390 0.2791 G 1.2218 119.3390 120.0000 18.9474 59 8.66724491119385 97.6759684853388 78.6497 79.0000 12.4506 183 0.2791
1019 1 90.4545 0.6259 G 1.7546 169.4545 171.0000 36.0522 66 9.16699600219727 96.5784664511779 79.2582 79.0000 11.7190 188 0.6259
1020 1 37.1132 0.2568 G 1.2194 117.1132 118.0000 16.4347 53 8.21472454071045 96.0407587520585 78.9341 80.0000 10.6938 188 0.2568
1021 1 7276.8999 50.3543 G 76.9471 7353.8999 3490.0000 7612.5166 122 12.4633550643921 95.570902092636 77.3791 77.0000 12.3806 188 50.3543
1022 1 6499.6416 44.9759 G 69.6756 6577.6416 3326.0000 7196.7534 122 12.4633550643921 94.4038466508025 78.5432 78.0000 10.9359 168 44.9759
1024 1 13.0000 0.0900 L 0.9370 93.0000 92.0000 17.0332 31 6.2825493812561 99.2507086877832 79.9121 80.0000 12.8338 188 0.0900

Total number of rows: 36227

Table truncated, full table size 4692 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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