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Sample GSM198702 Query DataSets for GSM198702
Status Public on Jun 09, 2008
Title Radiation induced C3H mouse Fibrosarcoma, 1 day after gamma irradiation at 30 Gy (g_8520_30_1d_4)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Radiation induced C3H mouse Fibrosarcoma eatablished by National Institute of Radiological Science, Chiba, Japan
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 1 day after gamma irradiation at 30 Gy
Data processing global median normalization
 
Submission date Jun 06, 2007
Last update date Jun 02, 2008
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE11629 Gene expression profiles of four murine tumors after carbon-ion (C-ion) or gamma irradiation.

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 7700.8120 55.2643 G 80.3154 7780.8120 4659.0000 7923.8989 119 12.3091630935669 96.8782272189354 80.3462 80.0000 11.2522 188 55.2643
1002 1 2503.8914 17.9690 G 27.2744 2580.8914 3227.0000 1726.1272 92 10.8230323791504 94.6267908300439 78.7803 77.0000 11.7512 179 17.9690
1003 1 44.9833 0.3228 G 1.3040 123.9833 121.0000 17.2959 60 8.74038791656494 95.078291747929 79.4345 79.0000 10.7189 151 0.3228
1004 1 79.8308 0.5729 G 1.6220 159.8308 162.0000 36.0703 65 9.09728336334229 98.5418050800905 80.6484 80.0000 12.3612 188 0.5729
1005 1 120.7246 0.8664 G 2.0680 198.7246 216.0000 60.8042 69 9.37302112579346 96.096933541504 79.1813 78.0000 12.0646 188 0.8664
1006 1 5.2500 0.0377 L 0.8548 85.2500 84.0000 16.9669 32 6.38307666778564 99.7345700237528 81.4167 80.0000 13.1564 150 0.0377
1007 1 7405.2881 53.1435 G 74.9044 7485.2881 3782.0000 8023.8276 127 12.7161874771118 99.9312152228538 80.7582 80.0000 13.2875 188 53.1435
1008 1 7585.5044 54.4368 G 75.3390 7668.5044 4974.0000 7745.4297 121 12.4121704101563 101.7866847328 81.9725 83.0000 12.5245 188 54.4368
1010 1 696.8271 5.0007 G 7.9000 776.8271 927.0000 351.8234 81 10.1554126739502 98.3327747887531 80.0599 80.0000 12.2219 173 5.0007
1012 1 779.2625 5.5923 G 8.7467 859.2625 939.0000 451.8933 80 10.0925302505493 98.2380589512059 80.7308 80.0000 12.1587 188 5.5923
1013 1 57.3065 0.4113 G 1.4098 137.3065 136.0000 26.4377 62 8.88486671447754 97.3931821815832 80.5659 80.0000 11.5954 188 0.4113
1014 1 7132.3916 51.1851 G 73.7448 7211.3916 4109.0000 7696.9551 122 12.4633550643921 97.7884903770242 81.2527 79.0000 12.5257 188 51.1851
1015 1 7679.0332 55.1080 G 78.3841 7759.0332 4657.0000 8256.1367 123 12.5143299102783 98.9873042187027 79.3242 80.0000 12.6582 188 55.1080
1017 1 54.3860 0.3903 G 1.3636 135.3860 134.0000 23.8752 57 8.51907634735107 99.2857092901434 81.5714 81.0000 12.1905 188 0.3903
1018 1 43.6111 0.3130 G 1.2818 121.6111 121.0000 19.6048 54 8.29185962677002 94.877433160173 78.8187 78.0000 11.2516 188 0.3130
1019 1 100.6901 0.7226 G 1.8659 177.6901 182.0000 42.5767 71 9.50789165496826 95.2288695528621 77.4341 77.0000 12.1526 188 0.7226
1020 1 53.0500 0.3807 G 1.3457 134.0500 133.0000 22.2032 60 8.74038791656494 99.6127725549273 81.6923 81.0000 12.4085 188 0.3807
1021 1 7699.4067 55.2542 G 77.9065 7779.4067 3933.0000 8146.0557 125 12.6156625747681 99.8557096911106 80.8362 80.0000 13.2371 183 55.2542
1022 1 6933.7622 49.7596 G 69.4871 7017.7622 3719.0000 7685.4854 124 12.5650987625122 100.993676751811 82.5055 84.0000 11.3291 188 49.7596
1024 1 9.7368 0.0699 L 0.9196 89.7368 94.0000 16.0044 38 6.95579624176025 97.5853530545237 79.8343 80.0000 11.7236 187 0.0699

Total number of rows: 36227

Table truncated, full table size 4691 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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