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Sample GSM198710 Query DataSets for GSM198710
Status Public on Jun 09, 2008
Title Radiation induced C3H mouse Fibrosarcoma, 3 days after gamma irradiation at 50 Gy (g_8520_50_3d_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Radiation induced C3H mouse Fibrosarcoma eatablished by National Institute of Radiological Science, Chiba, Japan
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 3 days after gamma irradiation at 50 Gy
Data processing global median normalization
 
Submission date Jun 06, 2007
Last update date Jun 02, 2008
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE11629 Gene expression profiles of four murine tumors after carbon-ion (C-ion) or gamma irradiation.

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 16263.6484 183.4468 G 137.0851 16358.6484 8050.0000 16627.6074 150 13.8197660446167 119.332042670028 95.5250 95.0000 16.2214 124 183.4468
1002 1 664.8889 7.4997 G 6.8374 753.8889 865.0000 325.5599 90 10.7047443389893 110.259159364209 89.6758 89.0000 14.1728 188 7.4997
1003 1 39.4412 0.4449 G 1.1599 132.4412 130.0000 22.3616 68 9.30485343933105 114.182819397974 92.2692 93.0000 14.1219 188 0.4449
1004 1 56.8750 0.6415 G 1.3425 146.8750 141.0000 28.3245 72 9.57461452484131 109.407965753179 90.0604 90.0000 12.9386 188 0.6415
1005 1 63.9143 0.7209 G 1.4106 153.9143 151.0000 28.5025 70 9.44069766998291 109.115153281187 89.0220 90.0000 12.7434 188 0.7209
1006 1 56.8226 0.6409 G 1.3419 145.8226 150.0000 25.8073 62 8.88486671447754 108.669206978113 89.1264 89.0000 13.1128 188 0.6409
1007 1 15852.5127 178.8094 G 138.6247 15946.5127 6757.0000 17121.3438 158 14.1835060119629 115.033720873532 94.8917 94.0000 14.0225 124 178.8094
1008 1 15188.1494 171.3156 G 138.4775 15279.1494 6680.0000 16127.4941 136 13.1590490341187 110.33672273155 90.5417 91.0000 12.8911 124 171.3156
1010 1 228.9079 2.5820 G 2.9478 317.9079 342.0000 102.6507 76 9.83698177337646 107.84666551061 91.2033 89.0000 12.5644 188 2.5820
1012 1 203.4815 2.2952 G 2.7312 292.4815 319.0000 104.0144 81 10.1554126739502 107.089411763268 89.1813 89.0000 12.0596 188 2.2952
1013 1 55.7231 0.6285 G 1.3081 147.7231 143.0000 22.3052 65 9.09728336334229 112.926263045916 91.9780 92.0000 13.9508 188 0.6285
1014 1 14904.0146 168.1107 G 130.5634 14998.0146 6391.0000 16172.8398 141 13.3987598419189 114.871480920295 92.7417 94.0000 13.9143 124 168.1107
1015 1 15951.7959 179.9292 G 141.7624 16044.7959 7693.0000 16566.8457 134 13.0619335174561 113.180919212545 93.8626 93.0000 13.4539 188 179.9292
1017 1 123.3099 1.3909 G 1.9255 216.3099 222.0000 48.3976 71 9.50789165496826 112.339424379966 93.6044 93.0000 12.8929 188 1.3909
1018 1 51.4426 0.5803 G 1.2721 144.4426 143.0000 24.7145 61 8.81292343139648 113.543174089418 94.3407 93.0000 13.6954 188 0.5803
1019 1 59.3548 0.6695 G 1.3221 151.3548 150.0000 22.1302 62 8.88486671447754 114.482114362511 94.0769 92.0000 14.9881 188 0.6695
1020 1 36.3684 0.4102 G 1.1599 130.3684 130.0000 19.9593 57 8.51907634735107 112.400471058263 94.5440 94.0000 12.2670 188 0.4102
1021 1 15645.1768 176.4707 G 135.1419 15741.1768 6451.0000 16781.2441 138 13.2554540634155 116.478858115942 96.8750 96.0000 13.6526 124 176.4707
1022 1 16424.7246 185.2637 G 144.4586 16519.7246 9483.0000 16909.5488 129 12.8159236907959 114.356127098527 94.7308 95.0000 12.9041 188 185.2637
1024 1 38.9365 0.4392 G 1.1813 130.9365 133.0000 26.2309 63 8.95623207092285 110.84353097145 93.0220 92.0000 12.5624 188 0.4392

Total number of rows: 36227

Table truncated, full table size 4689 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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