NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM198711 Query DataSets for GSM198711
Status Public on Jun 09, 2008
Title SCC induced spontaneously in C3H/He mouse, no irradiation (g_scc7_0_0h_1)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Squamous cell carcinoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description no irradiation
Data processing global median normalization
 
Submission date Jun 06, 2007
Last update date Jun 02, 2008
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (2)
GSE5331 Radiation-induced genes expressed in two murine tumors.
GSE11629 Gene expression profiles of four murine tumors after carbon-ion (C-ion) or gamma irradiation.

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 8001.6401 57.2516 G 81.1895 8080.6401 6323.0000 7209.3281 116 12.1530151367188 99.52810657421 79.6209 79.0000 13.6854 188 57.2516
1002 1 1898.6111 13.5845 G 20.7588 1976.6111 2241.0000 1135.9189 90 10.7047443389893 95.2177715968244 78.8132 78.0000 11.4785 188 13.5845
1003 1 42.3077 0.3027 G 1.2475 119.3077 116.0000 22.2261 65 9.09728336334229 95.6376990621571 78.3242 77.0000 12.4251 188 0.3027
1004 1 135.8861 0.9723 G 2.2043 214.8861 195.0000 155.5856 79 10.0292530059814 97.4848911525703 81.1044 79.0000 12.3233 188 0.9723
1005 1 23.7708 0.1701 G 1.0573 101.7708 101.0000 12.7054 48 7.81764030456543 96.2523436063379 78.0110 78.0000 12.1682 188 0.1701
1006 1 14.3000 0.1023 L 0.9454 94.3000 90.0000 15.0070 30 6.18038702011108 99.7451048445135 79.9286 80.0000 13.1634 188 0.1023
1007 1 7171.8921 51.3148 G 73.4953 7251.8921 4991.0000 6985.6274 132 12.9640893936157 98.6714667430693 80.0756 80.0000 12.4476 123 51.3148
1008 1 7014.2539 50.1869 G 72.9930 7094.2539 4650.0000 7062.1733 132 12.9640893936157 97.1908342786498 79.8250 80.0000 11.4606 124 50.1869
1010 1 955.0568 6.8334 G 10.9568 1032.0568 1193.0000 524.5760 88 10.5851345062256 94.1933673222924 77.6140 77.0000 11.4623 177 6.8334
1012 1 905.9318 6.4819 G 9.7880 986.9318 1131.0000 521.9999 88 10.5851345062256 100.830774483157 80.9396 81.0000 13.2205 188 6.4819
1013 1 68.8833 0.4929 G 1.5324 148.8833 148.0000 30.5538 60 8.74038791656494 97.1597217997535 80.0989 80.0000 11.4398 188 0.4929
1014 1 6482.6616 46.3833 G 67.0162 6563.6616 3742.0000 6872.5649 138 13.2554540634155 97.9413657998131 81.2000 81.0000 11.2942 124 46.3833
1015 1 7528.1709 53.8639 G 74.8480 7608.1709 5270.0000 7199.7817 125 12.6156625747681 101.648255335111 83.6134 80.0000 14.4322 123 53.8639
1017 1 59.8493 0.4282 G 1.4339 137.8493 133.0000 29.1739 73 9.64087581634521 96.1371275484533 79.9038 78.0000 12.0914 162 0.4282
1018 1 68.5385 0.4904 G 1.5176 147.5385 149.0000 26.4325 65 9.09728336334229 97.2209451805285 79.2402 79.0000 12.1473 185 0.4904
1019 1 242.4865 1.7350 G 3.2796 322.4865 348.0000 91.0878 74 9.70668506622314 98.3310720297536 80.4451 80.0000 12.2207 188 1.7350
1020 1 11.7368 0.0840 L 0.9397 88.7368 87.0000 15.0700 57 8.51907634735107 94.4314908915197 78.4500 77.0000 11.6210 124 0.0840
1021 1 7013.7021 50.1829 G 72.1335 7095.7021 4310.0000 7359.9873 143 13.4934520721436 98.3689857071932 82.5385 82.0000 10.9127 121 50.1829
1022 1 7259.3252 51.9404 G 74.2314 7340.3252 4695.0000 7209.8677 128 12.7661533355713 98.8844210579761 81.6000 81.0000 11.9229 124 51.9404
1024 1 15.6061 0.1117 L 0.9599 93.6061 94.0000 14.8118 33 6.48204469680786 97.5213954462585 78.6044 78.0000 13.0143 188 0.1117

Total number of rows: 36227

Table truncated, full table size 4688 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap