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Sample GSM198712 Query DataSets for GSM198712
Status Public on Jun 09, 2008
Title SCC induced spontaneously in C3H/He mouse, no irradiation (g_scc7_0_0h_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Squamous cell carcinoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description no irradiation
Data processing global median normalization
 
Submission date Jun 06, 2007
Last update date Jun 02, 2008
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (2)
GSE5331 Radiation-induced genes expressed in two murine tumors.
GSE11629 Gene expression profiles of four murine tumors after carbon-ion (C-ion) or gamma irradiation.

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 7380.2202 59.5537 G 81.1473 7455.2202 4164.0000 7642.2529 120 12.3607740402222 91.8726309203193 75.0220 75.0000 11.2484 188 59.5537
1002 1 1703.3059 13.7446 G 19.7563 1774.3059 1985.0000 1008.9183 85 10.4031419754028 89.8095217775087 72.7529 71.0000 12.5397 180 13.7446
1003 1 34.0377 0.2747 G 1.1851 108.0377 112.0000 14.5121 53 8.21472454071045 91.1628075031261 74.0613 74.0000 11.4419 169 0.2747
1004 1 91.0000 0.7343 G 1.7866 168.0000 165.0000 40.3330 64 9.02703380584717 94.0320986692189 76.4451 77.0000 11.3547 170 0.7343
1005 1 6.9560 0.0561 L 0.8718 82.9560 81.0000 16.5310 91 10.7640514373779 95.1580933176907 76.5890 76.0000 12.7721 169 0.0561
1006 1 21.0732 0.1700 G 1.0293 94.0732 94.0000 16.9582 41 7.22515201568604 91.3973472933219 75.0939 73.0000 12.2649 187 0.1700
1007 1 7300.0781 58.9071 G 76.5389 7376.0781 4338.0000 7517.6396 117 12.2052869796753 96.3702958171607 76.3395 76.0000 13.5802 168 58.9071
1008 1 7048.0762 56.8736 G 78.7027 7122.0762 3184.0000 7364.3096 120 12.3607740402222 90.4934712226415 74.4286 74.0000 10.9956 188 56.8736
1010 1 896.4074 7.2334 G 10.5654 970.4074 1205.0000 533.4417 81 10.1554126739502 91.8480206358521 74.0479 74.0000 11.8987 173 7.2334
1012 1 769.1519 6.2066 G 8.9899 845.1519 1032.0000 489.7346 79 10.0292530059814 94.0117924485768 74.9396 76.0000 12.0079 188 6.2066
1013 1 60.8136 0.4907 G 1.4717 135.8136 133.0000 25.5047 59 8.66724491119385 92.2810008422269 74.8736 75.0000 11.5207 188 0.4907
1014 1 7430.9385 59.9630 G 77.5185 7507.9385 5314.0000 7255.9531 116 12.1530151367188 96.8534563717766 77.3132 77.0000 13.2356 188 59.9630
1015 1 7177.5669 57.9185 G 76.3789 7253.5669 3576.0000 7795.6167 122 12.4633550643921 94.9682049038396 76.5385 76.0000 12.6455 188 57.9185
1017 1 58.6719 0.4734 G 1.4560 132.6719 130.0000 24.6101 64 9.02703380584717 91.1190941638398 74.7088 74.0000 11.4127 188 0.4734
1018 1 65.0984 0.5253 G 1.5167 138.0984 137.0000 26.8723 61 8.81292343139648 91.05341975467 73.1099 73.0000 12.0356 188 0.5253
1019 1 213.2692 1.7209 G 3.1413 287.2692 333.0000 108.6825 78 9.96557521820068 91.448231517111 75.2473 74.0000 11.6322 188 1.7209
1020 1 12.2647 0.0990 L 0.9289 87.2647 87.0000 16.2595 34 6.57952451705933 93.9456624484579 75.5879 75.0000 12.6304 188 0.0990
1021 1 7008.6211 56.5552 G 75.4703 7084.6211 3703.0000 7634.3525 126 12.6660251617432 93.8729984917166 75.7967 76.0000 11.9153 188 56.5552
1022 1 6925.1826 55.8819 G 74.6718 7001.1826 3538.0000 7366.4951 117 12.2052869796753 93.7593751302697 75.7033 76.0000 11.8396 188 55.8819
1024 1 19.8857 0.1605 G 1.0076 93.8857 91.0000 15.1068 35 6.67558097839355 93.1765857236659 75.3297 74.0000 12.7844 188 0.1605

Total number of rows: 36227

Table truncated, full table size 4686 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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