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Sample GSM198713 Query DataSets for GSM198713
Status Public on Jun 09, 2008
Title SCC induced spontaneously in C3H/He mouse, 6 hours after gamma irradiation at 30 Gy (g_scc7_30_6h_1)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Squamous cell carcinoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 6 hours after gamma irradiation at 30 Gy
Data processing global median normalization
 
Submission date Jun 06, 2007
Last update date Jun 02, 2008
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE11629 Gene expression profiles of four murine tumors after carbon-ion (C-ion) or gamma irradiation.

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 7449.2559 57.7151 G 80.2040 7524.2559 5494.0000 6995.4946 135 13.1105813980103 93.813987675811 76.6000 75.0000 12.5427 119 57.7151
1002 1 1845.6526 14.2997 G 21.5214 1918.6526 2024.0000 1162.9662 95 10.9980792999268 89.1507906994222 73.8895 73.0000 10.7672 187 14.2997
1003 1 36.2833 0.2811 G 1.2268 109.2833 108.0000 16.7870 60 8.74038791656494 89.077396719061 74.3022 73.0000 10.7183 188 0.2811
1004 1 93.2609 0.7226 G 1.7765 168.2609 172.0000 38.7974 69 9.37302112579346 94.717069452457 73.6264 75.0000 13.1447 188 0.7226
1005 1 20.4250 0.1582 G 1.0424 95.4250 98.0000 10.3123 40 7.13649654388428 91.5426033830201 74.3242 75.0000 11.0284 188 0.1582
1006 1 11.5000 0.0891 L 0.9353 84.5000 82.0000 16.4241 40 7.13649654388428 90.349605219301 73.2747 73.0000 11.5664 188 0.0891
1007 1 7421.5664 57.5006 G 81.4751 7495.5664 5084.0000 7033.0107 138 13.2554540634155 91.9982241960868 74.9417 74.0000 11.9988 124 57.5006
1008 1 6832.9858 52.9404 G 75.4618 6907.9858 3587.0000 6866.9746 141 13.3987598419189 91.5427816566951 75.7000 75.0000 11.0285 114 52.9404
1010 1 1009.7693 7.8235 G 11.8518 1083.7693 1276.0000 562.3029 91 10.7640514373779 91.4434854426946 74.4329 74.0000 11.6290 170 7.8235
1012 1 1063.4204 8.2391 G 12.1379 1138.4204 1313.0000 562.1288 88 10.5851345062256 93.7908792063653 76.1868 75.0000 12.5273 188 8.2391
1013 1 58.8824 0.4562 G 1.4371 133.8824 128.0000 26.4500 68 9.30485343933105 93.1645003097087 75.7802 75.0000 12.1097 188 0.4562
1014 1 7296.7368 56.5334 G 79.9575 7370.7368 5065.0000 6946.8540 135 13.1105813980103 92.1832303707645 74.1083 74.0000 12.1222 124 56.5334
1015 1 7114.5864 55.1222 G 78.8743 7188.5864 4037.0000 7207.5679 147 13.6808700561523 91.1397567181569 75.4583 74.0000 11.4265 124 55.1222
1017 1 38.0161 0.2945 G 1.2177 111.0161 109.0000 15.4225 62 8.88486671447754 91.1685321738684 73.6154 73.0000 12.1124 188 0.2945
1018 1 55.0000 0.4261 G 1.4103 130.0000 126.0000 23.2617 67 9.23618125915527 92.1765447965537 74.9835 75.0000 11.4510 188 0.4261
1019 1 167.0253 1.2941 G 2.6987 239.0253 253.0000 69.9130 79 10.0292530059814 88.5706582462486 73.8956 72.0000 11.0471 188 1.2941
1020 1 22.6383 0.1754 G 1.0396 94.6383 96.0000 14.4420 47 7.73577785491943 91.0328009235795 73.1099 72.0000 12.6885 188 0.1754
1021 1 6977.6895 54.0615 G 77.4252 7052.6895 4269.0000 6948.3379 147 13.6808700561523 91.0903508053633 75.4833 75.0000 10.7269 124 54.0615
1022 1 6632.4521 51.3867 G 72.0639 6709.4521 3865.0000 6782.3701 148 13.7273254394531 93.104269490627 76.3131 77.0000 10.7362 103 51.3867
1024 1 15.4000 0.1193 L 0.9776 87.4000 87.0000 14.5582 40 7.13649654388428 89.4070049379895 73.9345 72.0000 11.6047 174 0.1193

Total number of rows: 36227

Table truncated, full table size 4687 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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