NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM198716 Query DataSets for GSM198716
Status Public on Jun 09, 2008
Title SCC induced spontaneously in C3H/He mouse, 1 day after gamma irradiation at 30 Gy (g_scc7_30_1d_4)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Squamous cell carcinoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 1 day after gamma irradiation at 30 Gy
Data processing global median normalization
 
Submission date Jun 06, 2007
Last update date Jun 02, 2008
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (2)
GSE5331 Radiation-induced genes expressed in two murine tumors.
GSE11629 Gene expression profiles of four murine tumors after carbon-ion (C-ion) or gamma irradiation.

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 7119.5269 62.5509 G 74.7124 7198.5269 4591.0000 7428.3555 114 12.0477924346924 96.3498146834812 79.2582 79.0000 11.5665 188 62.5509
1002 1 856.9445 C 1.3265 942.9445 942.0000 788.7641 36 6.7702751159668 710.852256522503 234.9379 86.0000 416.5682 183 7.5290
1003 1 38.2333 0.3359 G 1.2172 114.2333 111.0000 17.2987 60 8.74038791656494 93.8458004712765 77.5472 76.0000 11.8972 165 0.3359
1004 1 69.0278 0.6065 G 1.5378 145.0278 147.0000 32.6377 72 9.57461452484131 94.3107414283532 76.1713 76.0000 12.2072 187 0.6065
1005 1 12.0556 0.1059 L 0.9406 90.0556 94.0000 15.6985 36 6.7702751159668 95.7390583569294 77.1868 78.0000 11.8260 188 0.1059
1006 1 18.4063 0.1617 G 1.0104 95.4063 98.0000 15.7199 32 6.38307666778564 94.4255583382719 77.2994 77.0000 11.6170 183 0.1617
1007 1 7273.0527 63.8998 G 79.3111 7348.0527 3551.0000 7559.7788 116 12.1530151367188 92.6484917506801 76.0110 75.0000 11.7657 187 63.8998
1008 1 7126.7856 62.6147 G 77.3423 7203.7856 4222.0000 7498.6050 114 12.0477924346924 93.1416004679696 76.6941 77.0000 10.7611 176 62.6147
1010 1 1108.2593 9.7370 G 12.3840 1185.2593 1363.0000 602.0332 81 10.1554126739502 95.7087085889178 78.1744 77.0000 12.4725 178 9.7370
1012 1 864.6829 7.5970 G 10.0903 941.6829 1173.0000 513.2997 82 10.2179079055786 93.3252396889632 77.0110 77.0000 10.8835 188 7.5970
1013 1 50.3051 0.4420 G 1.3406 127.3051 126.0000 22.8698 59 8.66724491119385 94.9638150198653 76.9615 77.0000 11.9759 188 0.4420
1014 1 7229.2183 63.5147 G 77.6141 7305.2183 4357.0000 7475.0181 112 11.9416427612305 94.1223483935122 76.7967 76.0000 12.0816 188 63.5147
1015 1 7553.5088 66.3638 G 81.2530 7630.5088 4385.0000 7690.1470 116 12.1530151367188 93.9104887674574 77.5275 77.0000 11.2737 188 66.3638
1017 1 30.9608 0.2720 G 1.1554 106.9608 108.0000 14.4791 51 8.0582389831543 92.5706747723551 77.5495 76.0000 11.0471 188 0.2720
1018 1 55.3158 0.4860 G 1.3952 130.3158 130.0000 20.9980 57 8.51907634735107 93.3998048560429 75.7143 75.0000 12.2665 188 0.4860
1019 1 146.5224 1.2873 G 2.3682 224.5224 236.0000 58.5714 67 9.23618125915527 94.8078544382038 76.6222 78.0000 11.2052 186 1.2873
1020 1 17.2581 0.1516 L 0.9916 95.2581 98.0000 12.7481 31 6.2825493812561 96.0674841016626 78.3407 78.0000 12.0450 188 0.1516
1021 1 7492.2388 65.8255 G 80.1108 7570.2388 5030.0000 7691.9893 115 12.1005182266235 94.4971581225905 78.5769 78.0000 10.9981 188 65.8255
1022 1 6868.5840 60.3462 G 74.9067 6944.5840 3918.0000 7353.0054 115 12.1005182266235 92.7097556022128 76.5110 76.0000 11.1398 188 60.3462
1024 1 14.0250 0.1232 L 0.9706 90.0250 91.0000 14.9022 40 7.13649654388428 92.7514169077819 76.4667 76.0000 11.1676 186 0.1232

Total number of rows: 36227

Table truncated, full table size 4683 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap