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Sample GSM198717 Query DataSets for GSM198717
Status Public on Jun 09, 2008
Title SCC induced spontaneously in C3H/He mouse, 3 days after gamma irradiation at 30 Gy (g_scc7_30_3d_1)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Squamous cell carcinoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 3 days after gamma irradiation at 30 Gy
Data processing global median normalization
 
Submission date Jun 06, 2007
Last update date Jun 02, 2008
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE11629 Gene expression profiles of four murine tumors after carbon-ion (C-ion) or gamma irradiation.

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 7728.6406 63.7094 G 80.5948 7807.6406 4777.0000 7592.3193 105 11.562445640564 96.8751819433442 79.3571 79.0000 11.9168 188 63.7094
1002 1 1485.0674 12.2418 G 16.1328 1563.0674 1819.0000 1020.9716 89 10.6451082229614 96.8875155528883 77.4637 78.0000 12.5917 185 12.2418
1003 1 32.1569 0.2651 G 1.1443 109.1569 109.0000 16.0335 51 8.0582389831543 95.3945847014722 77.2360 77.0000 12.2631 184 0.2651
1004 1 74.0769 0.6106 G 1.5689 150.0769 148.0000 25.4149 65 9.09728336334229 95.6593498133561 77.2667 76.0000 13.1062 186 0.6106
1005 1 15.3513 0.1265 L 0.9716 92.3513 96.0000 13.8822 37 6.86366271972656 95.0554509880525 78.1989 77.0000 12.0370 187 0.1265
1006 1 11.6579 0.0961 L 0.9270 89.6579 93.0000 14.0362 38 6.95579624176025 96.7158815791859 78.4943 78.0000 12.4773 182 0.0961
1007 1 7781.5620 64.1457 G 82.0328 7859.5620 5030.0000 7857.8599 107 11.6720447540283 95.809959015856 79.3187 78.0000 11.8733 188 64.1457
1008 1 7782.6431 64.1546 G 80.7775 7861.6431 4460.0000 7743.5747 100 11.2837915420532 97.3246043158673 79.6481 79.0000 12.2164 168 64.1546
1010 1 954.0482 7.8645 G 11.1275 1030.0482 1197.0000 592.1541 83 10.2800235748291 92.5677817818806 76.6818 76.0000 11.0452 160 7.8645
1012 1 980.0750 8.0790 G 11.0658 1059.0750 1271.0000 537.1614 80 10.0925302505493 95.7073548252763 78.9945 79.0000 11.1382 188 8.0790
1013 1 50.6000 0.4171 G 1.3440 127.6000 126.0000 20.7864 60 8.74038791656494 94.9396595078437 77.0879 77.0000 11.9598 188 0.4171
1014 1 7101.6147 58.5407 G 76.4573 7178.6147 3916.0000 7352.5371 111 11.8882122039795 93.8905102285497 75.9615 77.0000 11.2603 188 58.5407
1015 1 7390.0176 60.9180 G 77.6159 7468.0176 3975.0000 7913.4434 116 12.1530151367188 96.2175897142267 78.0549 78.0000 12.1451 188 60.9180
1017 1 35.6250 0.2937 G 1.1929 111.6250 110.0000 13.1020 56 8.444016456604 93.5717283739038 75.1703 76.0000 11.7145 188 0.2937
1018 1 50.7778 0.4186 G 1.3445 126.7778 123.0000 20.9220 54 8.29185962677002 94.2926755872206 75.3197 76.0000 12.1951 153 0.4186
1019 1 121.9565 1.0053 G 2.1166 198.9565 208.0000 53.1594 69 9.37302112579346 93.9969195008393 75.6185 77.0000 11.3313 179 1.0053
1020 1 19.8261 0.1634 G 1.0384 94.8261 97.0000 17.3785 46 7.65303993225098 91.315936987254 75.4780 75.0000 10.8773 188 0.1634
1021 1 7854.8223 64.7496 G 81.0924 7933.8223 4848.0000 7735.6465 109 11.7806243896484 97.8367802567837 77.9824 79.0000 12.5579 176 64.7496
1022 1 7616.2827 62.7832 G 82.6737 7691.2827 4675.0000 7678.2324 101 11.3400707244873 93.0318225828897 76.2208 75.0000 12.0212 160 62.7832
1024 1 16.5909 0.1368 L 0.9889 92.5909 96.0000 13.2276 44 7.48482084274292 93.6272834046961 76.6758 76.0000 11.7515 188 0.1368

Total number of rows: 36227

Table truncated, full table size 4685 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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