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Sample GSM198718 Query DataSets for GSM198718
Status Public on Jun 09, 2008
Title SCC induced spontaneously in C3H/He mouse, 3 days after gamma irradiation at 30 Gy (g_scc7_30_3d_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Squamous cell carcinoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 3 days after gamma irradiation at 30 Gy
Data processing global median normalization
 
Submission date Jun 06, 2007
Last update date Jun 02, 2008
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE11629 Gene expression profiles of four murine tumors after carbon-ion (C-ion) or gamma irradiation.

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 7498.1050 66.2011 G 73.9121 7581.1050 4989.0000 7378.8687 107 11.6720447540283 102.569187168036 82.2556 83.0000 13.0461 186 66.2011
1002 1 1405.7241 12.4112 G 14.7759 1485.7241 1804.0000 909.8736 87 10.5248203277588 100.550207926461 81.1923 80.0000 13.7001 188 12.4112
1003 1 32.3889 0.2860 G 1.1678 108.3889 108.0000 16.4457 54 8.29185962677002 92.812553795096 77.0989 76.0000 11.2084 188 0.2860
1004 1 79.1111 0.6985 G 1.6288 158.1111 155.0000 28.6124 63 8.95623207092285 97.0750161696282 78.6037 79.0000 12.0500 170 0.6985
1005 1 6.0118 0.0531 L 0.8783 86.0118 83.0000 16.9070 85 10.4031419754028 97.9311121946817 80.3588 80.0000 11.9541 217 0.0531
1006 1 12.2222 0.1079 L 0.9339 92.2222 94.0000 15.0538 36 6.7702751159668 98.7537971265616 80.1813 80.0000 12.5025 188 0.1079
1007 1 7312.4819 64.5623 G 72.6462 7393.4819 4189.0000 7336.7642 112 11.9416427612305 101.773847415232 81.1099 81.0000 13.8492 188 64.5623
1008 1 7212.4722 63.6793 G 76.3597 7289.4722 4360.0000 7404.7446 110 11.8345403671265 95.4623383417524 78.6556 77.0000 12.3082 186 63.6793
1010 1 877.6860 7.7491 G 9.7158 958.6860 1162.0000 547.2492 86 10.4641580581665 98.6725644467671 81.1643 81.0000 11.7817 144 7.7491
1012 1 836.6104 7.3865 G 9.4954 914.6104 1136.0000 479.3546 77 9.90148735046387 96.3215512068083 79.2802 78.0000 12.2144 188 7.3865
1013 1 53.4630 0.4720 G 1.3288 131.4630 135.0000 21.9382 54 8.29185962677002 98.9343211054105 79.0659 78.0000 13.9562 188 0.4720
1014 1 7355.7832 64.9446 G 78.0151 7433.7832 4999.0000 7464.0913 108 11.7264604568481 95.2865147145544 78.6484 78.0000 11.5243 188 64.9446
1015 1 10108.5947 89.2493 G 107.4269 10184.5947 9393.0000 8033.4077 182 15.2226667404175 94.8048742033399 77.6622 76.0000 12.5366 233 89.2493
1017 1 37.4898 0.3310 G 1.2063 116.4898 114.0000 18.6242 49 7.89865398406982 96.5680123085303 78.1333 79.0000 11.7120 186 0.3310
1018 1 45.5333 0.4020 G 1.2899 124.5333 123.0000 23.4893 60 8.74038791656494 96.5426268071107 78.5695 79.0000 11.6951 157 0.4020
1019 1 125.5797 1.1087 G 2.1291 204.5797 214.0000 55.7225 69 9.37302112579346 96.0874418958824 78.0311 79.0000 11.3916 167 1.1087
1020 1 20.4468 0.1805 G 1.0412 99.4468 100.0000 16.2975 47 7.73577785491943 95.5142252281031 79.0110 79.0000 11.0095 188 0.1805
1021 1 7845.2988 69.2665 G 80.7253 7926.2988 4377.0000 7779.3179 109 11.7806243896484 98.1885847988545 79.4231 81.0000 11.4591 188 69.2665
1022 1 6996.2021 61.7698 G 73.0962 7077.2021 4604.0000 7149.8530 106 11.617374420166 96.8203245821805 80.3846 81.0000 10.5469 188 61.7698
1024 1 8.0172 0.0708 L 0.8969 88.0172 85.0000 16.0059 58 8.59348011016846 98.1320024045819 78.3421 80.0000 12.0880 78 0.0708

Total number of rows: 36227

Table truncated, full table size 4684 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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