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Sample GSM198720 Query DataSets for GSM198720
Status Public on Jun 09, 2008
Title SCC induced spontaneously in C3H/He mouse, 6 hours after gamma irradiation at 50 Gy (g_scc7_50_6h_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Squamous cell carcinoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 6 hours after gamma irradiation at 50 Gy
Data processing global median normalization
 
Submission date Jun 06, 2007
Last update date Jun 02, 2008
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE11629 Gene expression profiles of four murine tumors after carbon-ion (C-ion) or gamma irradiation.

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 6768.8760 60.5755 G 70.6681 6846.8760 2594.0000 7627.0454 123 12.5143299102783 96.8878122541526 78.4505 78.0000 12.5919 188 60.5755
1002 1 1416.0341 12.6723 G 14.9333 1494.0341 1737.0000 941.8093 88 10.5851345062256 100.046948632044 80.0556 78.0000 14.6980 186 12.6723
1003 1 35.5625 0.3183 G 1.1932 110.5625 111.0000 13.4209 48 7.81764030456543 92.6623819584671 75.0714 75.0000 11.7749 188 0.3183
1004 1 82.1212 0.7349 G 1.7165 156.1212 157.0000 35.5645 66 9.16699600219727 90.9532256511994 75.4833 74.0000 11.3022 186 0.7349
1005 1 7.5676 0.0677 L 0.8946 83.5676 84.0000 16.4145 37 6.86366271972656 93.413339928533 76.0670 76.0000 11.6089 185 0.0677
1006 1 11.3429 0.1015 L 0.9386 86.3429 85.0000 12.6399 35 6.67558097839355 91.9953934756485 75.0989 75.0000 11.3303 188 0.1015
1007 1 6359.8594 56.9151 G 69.2580 6435.8594 2095.0000 7516.0757 130 12.8655023574829 92.9259091980638 77.8066 76.0000 11.2839 187 56.9151
1008 1 6701.2119 59.9699 G 73.4473 6775.2119 2982.0000 7561.8467 120 12.3607740402222 92.2458997116824 76.5549 74.0000 12.1639 188 59.9699
1010 1 825.1494 7.3844 G 9.8918 900.1494 992.0000 538.9180 87 10.5248203277588 90.9991361650665 74.4333 75.0000 10.6661 156 7.3844
1012 1 889.5190 7.9604 G 10.2298 964.5190 1085.0000 476.6733 79 10.0292530059814 94.2848085677236 75.3407 75.0000 12.8565 188 7.9604
1013 1 67.9538 0.6081 G 1.5581 141.9538 139.0000 26.2265 65 9.09728336334229 91.1058392057999 75.6593 74.0000 11.4039 188 0.6081
1014 1 6467.8115 57.8812 G 70.5583 6542.8115 2819.0000 7287.7817 124 12.5650987625122 92.7291096602136 76.4358 75.0000 11.8194 185 57.8812
1015 1 7663.7544 68.5838 G 75.4135 7742.7544 4711.0000 7740.1460 116 12.1530151367188 102.67063931058 80.8246 79.0000 15.7804 177 68.5838
1017 1 36.2679 0.3246 G 1.1980 109.2679 109.0000 15.2602 56 8.444016456604 91.2091398876102 74.1701 73.0000 12.1394 153 0.3246
1018 1 46.9825 0.4205 G 1.3458 119.9825 121.0000 17.4270 57 8.51907634735107 89.1546197716476 73.1566 73.0000 10.7697 172 0.4205
1019 1 127.6471 1.1423 G 2.1893 203.6471 221.0000 52.3596 68 9.30485343933105 93.0185779562495 75.4500 76.0000 11.3457 186 1.1423
1020 1 10.1212 0.0906 L 0.9128 85.1212 82.0000 15.3992 33 6.48204469680786 93.2511471299306 75.5769 75.0000 12.1674 188 0.0906
1021 1 6575.7710 58.8473 G 72.0415 6649.7710 2837.0000 7546.6484 133 13.0131034851074 92.3047220772531 76.2582 74.0000 12.2031 188 58.8473
1022 1 6447.5981 57.7003 G 70.4523 6522.5981 2481.0000 7367.3940 124 12.5650987625122 92.5818118260805 75.9769 75.0000 11.7212 179 57.7003
1024 1 10.6452 0.0953 L 0.9608 83.6452 84.0000 15.2158 62 8.88486671447754 87.056017583252 72.1776 73.0000 9.3707 111 0.0953

Total number of rows: 36227

Table truncated, full table size 4679 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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